Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01771 ATGGGTGAAAACAAACCAGCTGAAATCAAAGATTTTCAAATAGCAATTGCGGAGAAAGAAGAAGGAAAAAAACAGTTAGCCCCAAAAAGAAGCTCCAACAAAGACCGTCACACCAAAGTTGAAGGCAGAGGCCGAAGAATCCGTATGCCAGCTCTATGTGCTGCTAGGATTTTTCAATTGACCAGAGAATTGGATCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTACAGCAGGCGGAGCCGTCTATAATCGCCGCCACAGGCACCGGGACCATTCCTGCTTCTGCTCTAGCGACGGCAGCTGGTTCTGTTTCACAACAGGGTGCTTCTTTGTCGGCCGGATTGCATCAAAAGTTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGCGACCCCATTTGGCCGCCACTCCCACTGCCCTTTGGCCCTCATCGGTCACTGGCTTTGGTTTTCAGTCTTCAACTGCCGCTGCTGCTGTTGCTGCTCAATCAGCTACCAATTTACCTAATGAAACTTCAAATTACTTTCACAAACTTGGTTTCCCACCTTTTGATTTAACCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCAAACACTCAACAATTGCCTGGTTTGGAGCTTGGATTGTCCCAAGATGGTCATATAGGGGTCATAAATCCTCAAGCTCTCAACCAGATTTACCAACAGATGGGACAACCTAGAGTTCATCAACATCACCCCCAGCAACCTCCTGCTAAGGATGATTCTCAAGATTCAGCCTAG 789 48.42 MGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELDHKSDGETIQWLLQQAEPSIIAATGTGTIPASALATAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGRPHLAATPTALWPSSVTGFGFQSSTAAAAVAAQSATNLPNETSNYFHKLGFPPFDLTPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVINPQALNQIYQQMGQPRVHQHHPQQPPAKDDSQDSA 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20554511 20555522 - MELO3C014903.2.1 Cme06g01771 330920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01771 262 Pfam TCP family transcription factor 32 123 IPR017887 -
Cme06g01771 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 261 IPR005333 GO:0003700
Cme06g01771 262 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Cme06g01771 262 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 3 261 - -
Cme06g01771 262 MobiDBLite consensus disorder prediction 18 43 - -
Cme06g01771 262 MobiDBLite consensus disorder prediction 240 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01771 Cme-Chr6:20554511 Cme12g02008 Cme-Chr12:25710988 5.34E-38 dispersed
Cme11g02340 Cme-Chr11:30437155 Cme06g01771 Cme-Chr6:20554511 6.25E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41519 PF03634 TCP 2.40E-30 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01771 - - csv:101222902 497.664