Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01785 ATGGAGAATTATCAGATGTTTTTTCCTTGCTCCGATGGCGGCGGAGGACTGTCAGCCTATCATCATGCGGACATGTCATCCGGCGGTGCTTCTGATATGTTCGGTAATTTTCAGGGTGGCGATATGGAGGCGGTAAGTGGGTTTTTGGGGATGAAAAGAGAGGTGGATGGGGCGACGGTGGAAGCAGAGGGCGGTGGGAGAAAGAAGGGAGAGAAGAAGGTGAGGAAACCGAGATATGCTTTCCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGGTATCGTTGGAGAAAATATGGTCAAAAAGCTGTAAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACACATCAAGGGTGCAATGTGAAGAAACAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGATAACTTTGAACAAATATTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 513 44.83 MENYQMFFPCSDGGGGLSAYHHADMSSGGASDMFGNFQGGDMEAVSGFLGMKREVDGATVEAEGGGRKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20817270 20820114 + MELO3C014896.2.1 Cme06g01785 330934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01785 170 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g01785 170 SUPERFAMILY WRKY DNA-binding domain 82 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g01785 170 Gene3D WRKY domain 75 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g01785 170 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 54 165 - -
Cme06g01785 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 165 IPR044810 GO:0003700
Cme06g01785 170 Pfam WRKY DNA -binding domain 91 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g01785 170 SMART WRKY_cls 90 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00112 Cme-Chr3:1584861 Cme06g01785 Cme-Chr6:20817270 1.52E-53 dispersed
Cme06g00148 Cme-Chr6:896741 Cme06g01785 Cme-Chr6:20817270 4.58E-34 dispersed
Cme06g01785 Cme-Chr6:20817270 Cme07g01915 Cme-Chr7:24377154 6.72E-39 dispersed
Cme06g01785 Cme-Chr6:20817270 Cme07g01613 Cme-Chr7:21921994 9.18E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41520 PF03106 WRKY 3.30E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01785 - - csv:101219349 335.109