Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02003 ATGGGGGACAGAATCACTGCGCTCCAACAACTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTTTCTGAAGCAATTGAATACATAAAGTTTCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGTAGTACAGCAACAACATCAGCAGCAGAGAAATGAGAAATCAATTAAAGAAGGAGAAGGAGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCGGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGTGGAACCTTCAGATAA 330 42.12 MGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAVVQQQHQQQRNEKSIKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24576276 24579219 - MELO3C027216.2.1 Cme06g02003 331152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02003 109 MobiDBLite consensus disorder prediction 51 74 - -
Cme06g02003 109 CDD bHLH_AtbHLH_like 1 42 IPR045239 -
Cme06g02003 109 PANTHER TRANSCRIPTION FACTOR BHLH123 1 99 - -
Cme06g02003 109 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 34 IPR011598 GO:0046983
Cme06g02003 109 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 53 IPR036638 GO:0046983
Cme06g02003 109 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 99 - -
Cme06g02003 109 Gene3D - 1 73 IPR036638 GO:0046983
Cme06g02003 109 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02003 Cme-Chr6:24576276 Cme10g01341 Cme-Chr10:15349540 1.94E-31 dispersed
Cme06g02003 Cme-Chr6:24576276 Cme08g00357 Cme-Chr8:2256998 2.23E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02003 - - csv:101220471 216.468