Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02012 ATGGCTTCACATTACAAAATCATCCTCTTCATTTCCATAACTTTACTTTTCACAATTCTTTCAAATAATGTCTCTGCCAATAATCCCATCATCAAATGGTGCAAAACGACGCCGCATCCAAAAGTTTGCATTTCCTTCATGTCCCCAATCAAACCTCCACCACAAAACAGAGAGGAGTTTCGACAAGTGGCCATTCAAACCACTTTGGAAAAAGCCGATGAAGCTAAAGCTTACACTGCCCGGTTCGGTCCGACCTGTAAAACCACGCGCCAGAGAACCGCCTGGACTGACTGTTTCAAGCTCTACAACGATGTCGTTTTCCAATTAAACCGCACACTACAATGCCTCGTTACGGATGAAACAATCCACCGCCGCCCCACTTGTACGGATTTCGATGCGCAAACCTGGCTGAGCTCTGCTCTTACTGACATCGATTTATGCAACTCCGGCGCGGCGGATCTCAATGTCACGGATTTTATAGCGCCGATCAAATGCTTGAACGTTTCGAAGATGATTAGTAATTGTTTGGCTATTAATGGTGGATTCTTAGAGGAAGAAGGGGTTAAATATGATGATGGTGGAAATGGGTCGTTTCCGATGTGGGTTTCGGAAGGTGATCGGAAATTGTTGGAGTCGAGGCCGCGGAGAGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCGGGAAAATTTCGGAGGGTTCAGGCGGCGATTGATGCAGCGGCGAGAAGGCGTGGGAGGGGGAGATTTGTAATTTACGTAAAACGAGGGGTATATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATATAATGTTGGTGGGAGATGGGATGAGATTTACAGTGATTACAAGTGGAAGAAGTGTCGCCGCCGGTTTCACCACCTTCAGTTCGGCAACCGCTGGTATCCAAGGTCCAGGCTTCATAGCTCGAGACATAAGATTCGTGAATACAGCCGGTCCACGAATGGGGCAAGCAGTGGCATTGCGATCATCATCAGACCTATCAGTGTTTCATCGATGTAGCTTCGAGGGCTACCAAGACACACTAATGGTCCTTTCACAGAGGCAATTCTATAAACAATGTTATATTTACGGTACAATTGACTTCATTTTCGGCAACGCCGCAGTAGTTTTACAAAATTGCTTGATCTATGTTAGAAGACCGTTAAAGGGACAAGTCAATGTGATCACAGCCCAAGGTCGAGAGGACCCATTTCAAAACAGTGGAATCTCAATCCACAACTCTCAAATAAGAGCCGCGGCTGACTTGCGACCCATGGTTGGCTCGGTGAAGACCTACTTGGGTCGGCCATGGAAGAAGTATTCACGGACTGTGATAATGAGAAGCTACATTGATAGCTTGGTTAGCCCAGCCGGATGGTTGGCGTGGCAAAGTAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTACCATAATATTGGGCCTAGAGCTTCAACACGGTTTAGAGTTAAATGGCCTGGCTTTCATGTCATTAAAAGCCCAAATGTGGCATCTAAGTTTAGTGTTCGGAGACTTATTGCTGGCCAGACATGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGAGTCTGA 1602 46.44 MASHYKIILFISITLLFTILSNNVSANNPIIKWCKTTPHPKVCISFMSPIKPPPQNREEFRQVAIQTTLEKADEAKAYTARFGPTCKTTRQRTAWTDCFKLYNDVVFQLNRTLQCLVTDETIHRRPTCTDFDAQTWLSSALTDIDLCNSGAADLNVTDFIAPIKCLNVSKMISNCLAINGGFLEEEGVKYDDGGNGSFPMWVSEGDRKLLESRPRRVRANLVVAKDGSGKFRRVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNIMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCLIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMVGSVKTYLGRPWKKYSRTVIMRSYIDSLVSPAGWLAWQSSKFAQATLYYGEYHNIGPRASTRFRVKWPGFHVIKSPNVASKFSVRRLIAGQTWLPATGVPFKLGV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24927549 24930158 + MELO3C016609.2.1 Cme06g02012 331161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02012 533 CDD PMEI-like_3 33 182 - -
Cme06g02012 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 180 IPR035513 -
Cme06g02012 533 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Cme06g02012 533 Pfam Pectinesterase 220 518 IPR000070 GO:0030599|GO:0042545
Cme06g02012 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 181 IPR035513 -
Cme06g02012 533 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 7 532 - -
Cme06g02012 533 PANTHER PECTINESTERASE 7 532 - -
Cme06g02012 533 Pfam Plant invertase/pectin methylesterase inhibitor 32 178 IPR006501 GO:0004857
Cme06g02012 533 ProSitePatterns Pectinesterase signature 1. 246 265 IPR018040 -
Cme06g02012 533 SUPERFAMILY Pectin lyase-like 217 531 IPR011050 -
Cme06g02012 533 SMART PMEI_2 26 178 IPR006501 GO:0004857
Cme06g02012 533 Gene3D - 215 533 IPR012334 -
Cme06g02012 533 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02012 Cme-Chr6:24927549 Cme09g01544 Cme-Chr9:20495373 0 dispersed
Cme06g02012 Cme-Chr6:24927549 Cme09g01369 Cme-Chr9:18920596 4.85E-148 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02012 K01051 - csv:101213944 988.408