Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02044 ATGCCAACAGTTTGGCTGTCCTTGAAGAAATCTTTGCACTGTAAATCAGAGCCATCAGAAGTTCATGACCCAAAAAGCAAAAAGAATTTGGGAGCAATTTTGACAAGAAAAACTGGGGGAGGAGGAAGATCAGGTTGCTCAAGGTCTATAGCAAATCTCAAAGATGTCATCAATGGCGGCAGCAGAAGACATTTGGATAAACCCCCAAGTTGCAGTCCAAGATCCATTGGTAGCAGTGAGTTTCTCAACCCAATAACCCACGAAGTTATTCTCAGCAACTCAAAATGCGAGCTCAAAATCACCGGTTTTCATGGTGGTTTCCCCCAAGATCTTCCTCCAGCCGATACTCACGGCGGCGCTTCCACTTTCGTCGGTACTCTGACACCCGGCACTCCCGGCCCCGGTGGCCACCCGTCAATGCATTACTTCAATCCTTCCTTGAGGTCTTCTTCTAAAAAATTCACTTTTAGAGAGGGTTTTGGTAGCTCTAATAAATCTGGCGGCGGCGCTGGCGGAGGAGCCCGCGGCAGTGGAGTTCATTTGAGTAATAGAATCTCTTTGGAAACAGAGAATAGTAGGAATGGATGTTCTTCTGCGGTTACTTGCCATAAATGTGGAGAGCAATTCAACAAATGGGATGCTGCTGAAGCTCACCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCTTCAAGAAAAATTGTGGAGATCATATGCAGAACAAGCTGGTTAAAGTCCGAGAATCAAAGTGGAAGAATAGAAAGAGTCTTGAAAGTTCACAATATGCAACGGACCCTAGCTCGTTTCGAAGAGTATCGCGAGACAGTTAAGATCAAAGCCAGCAAGCTCCCGAAGAAGCACCCTCGGTGCCTTGCCGATGGGAACGAGCTCCTACGATTCTACGGCACGACAGTTGCGTGCTTGCTTGGTCTTAATGGCTCATCCAGCCTATGCATATCGGAGAAATGCTGCGTTTGTAGAATCATACGTAACGGGTTCTCGGCAAAGACAGAGATGGAAGAAGGGATAGGGGTGTTCACAACTTCAACGAGCGCAAGAGCATTCAGCTCGATCAAGGGATCGGGAGGGGACGAGGGGATGACGAGGAAGGCGATGATAGTTTGCAGGGTGATTGCAGGGAGGGTTCATAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAAACAGGGTTTGATTCATTGGCAGGGAAAGTCGGGTTGCATTCAAATATAGAAGAACTTTATTTGTTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1308 46.79 MPTVWLSLKKSLHCKSEPSEVHDPKSKKNLGAILTRKTGGGGRSGCSRSIANLKDVINGGSRRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSKCELKITGFHGGFPQDLPPADTHGGASTFVGTLTPGTPGPGGHPSMHYFNPSLRSSSKKFTFREGFGSSNKSGGGAGGGARGSGVHLSNRISLETENSRNGCSSAVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACLLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMEEGIGVFTTSTSARAFSSIKGSGGDEGMTRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25731769 25733729 - MELO3C016581.2.1 Cme06g02044 331193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02044 435 MobiDBLite consensus disorder prediction 159 179 - -
Cme06g02044 435 Gene3D - 224 434 - -
Cme06g02044 435 MobiDBLite consensus disorder prediction 59 78 - -
Cme06g02044 435 PANTHER - 2 435 - -
Cme06g02044 435 SUPERFAMILY ADP-ribosylation 225 434 - -
Cme06g02044 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 435 - -
Cme06g02044 435 ProSitePatterns Zinc finger C2H2 type domain signature. 202 223 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02044 Cme-Chr6:25731769 Cme08g00365 Cme-Chr8:2287702 2.65E-63 dispersed
Cme04g00474 Cme-Chr4:3750890 Cme06g02044 Cme-Chr6:25731769 1.74E-62 transposed
Cme09g00823 Cme-Chr9:10602865 Cme06g02044 Cme-Chr6:25731769 1.15E-76 transposed
Cme09g01639 Cme-Chr9:21132942 Cme06g02044 Cme-Chr6:25731769 3.94E-30 transposed
Cme11g01366 Cme-Chr11:20463343 Cme06g02044 Cme-Chr6:25731769 7.35E-55 transposed
Cme04g00792 Cme-Chr4:9675644 Cme06g02044 Cme-Chr6:25731769 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41526 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02044 - - csv:101208986 822.002