Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02045 ATGAAGAAAAATCCAGCCACTCAACGTCAACATCCTTTGGAAATTGCCGTGCTAATCGTAAACACTCATGGCCGCCCCATCGATATGGAATCATTCTCTCCAGCATTGCTGGTTTTTAACTTACTCCTCTATCTCCTCACTTATGTAGCCGCCACTGATTCCTTAACTGCTCAAGACCCATATCTCAGAGATGGCTTTAGTCTTGTTTCCAGTAATGGAAACTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGCGAGATCGTTACTTGGGAATTTCGTTCAAGAATCGGCGAGGTCCGACCTCCGTTTGGGTTGCGAATAGGAACACCCCAATCAATGATTCATCTGGTGTACTGGTGATTAACATTACAACAGGAAATCTTACACTTTACAGCCATGATTCCACCACCATTGTTTGGACCGCCAGGTTACTGAGAAAAATCTCCAATGGGGTACTCCAATTATTGGACATTGGAAATCTTGTGCTGAGAAATAGGAAAGATGAAAATCCCTTAAACTACTCCTGGCAAAGTTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAAAAATAACATTAACAGAAGACTAGACGCTTGGAAGAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAATCTGTCATGTGGAAAGGTTCACAAGAATACTTCAGGCATGGCCCATGGAATGGTATGCGAATCAGTAGTAATCCACTAGTTAGATCATTTCTGTACCTCAACTTTGTTTCAGATGAGAATGAAGTTTACTACCAATACTCTGTTCCAACTTTGTTTCCAGAGATTTCTGCGATGGTGGTGATAAACCAATCCAATTACTTGCTCATGATGTACGTGTGGTCTGCAACCGAGAGACAGTGGATGATTTATAATTTATTGCCAAGAGATATCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGAAGCTCCACCTTGTAAATGTCTAGAAGGCTTTAAGCCAAGATCAGCTGATAGTTGGACGGCGGGAGAATTTTCGGACGGTTGTGAGCGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACGAGCTGAAATATCCAGACACAAAGCGTACTTGGGTCGACAAAAGCATGGATCTTGAAGAGTGCAAGCAAAAATGCTTGAGTAATTGCTCTTGTATGGCTTATGCAAATACAGACATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGACTGGTGATCTAATCGACTTGAAATTGATTCCGCACGCAGGACAGGATTTATATGTTAAAATGCTGGCATCAGAATTAGATGGCCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTTTCGATTGATAATAAGTTGGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTACGCTTACAAATGGACAAGATATTGCAGTGAAGAGACTTTCACGCTGTTCTGGACAGGGAATGAACGAGTTTAAGAATGAAGTAATCCTGATTGCAAAACTTCAACATCGAAATCTTGTAAAACTGCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTACGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGAACCCAACGTCAATTATTAGATTGGTCACAACGATACCACATTATATGTGGAATTGCTAGAGGACTCATGTATCTTCATCAAGATTCTCGATTGAGGATTATACATCGAGATTTAAAAGCAAGTAATATTTTACTTGATATGAATATGAATCCAAAAATTTCTGATTTTGGTCTTGCTAAAACTTGCGGTGGAGATCAAACCGAAGGACGAACAATAAAAGTGGTTGGAACTTAA 1950 41.08 MKKNPATQRQHPLEIAVLIVNTHGRPIDMESFSPALLVFNLLLYLLTYVAATDSLTAQDPYLRDGFSLVSSNGNFELGFFSPGLSRDRYLGISFKNRRGPTSVWVANRNTPINDSSGVLVINITTGNLTLYSHDSTTIVWTARLLRKISNGVLQLLDIGNLVLRNRKDENPLNYSWQSFDYPTDTLLPGMKLGWDLKNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGMRISSNPLVRSFLYLNFVSDENEVYYQYSVPTLFPEISAMVVINQSNYLLMMYVWSATERQWMIYNLLPRDICDNYALCGPYGYCDIREAPPCKCLEGFKPRSADSWTAGEFSDGCERNKLMNCGDEVGFAQLNELKYPDTKRTWVDKSMDLEECKQKCLSNCSCMAYANTDISGSGSGCALWTGDLIDLKLIPHAGQDLYVKMLASELDGHEKIEAQDLELPLFDLSLINSATNNFSIDNKLGEGGFGPVYKGTLTNGQDIAVKRLSRCSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKASNILLDMNMNPKISDFGLAKTCGGDQTEGRTIKVVGT 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25769150 25773499 - MELO3C016579.2.1 Cme06g02045 331194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02045 649 Gene3D Transferase(Phosphotransferase) domain 1 560 649 - -
Cme06g02045 649 SMART serkin_6 484 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02045 649 Gene3D - 47 179 IPR036426 -
Cme06g02045 649 ProSiteProfiles Bulb-type lectin domain profile. 53 176 IPR001480 -
Cme06g02045 649 CDD PAN_AP_plant 369 450 - -
Cme06g02045 649 Gene3D Phosphorylase Kinase; domain 1 447 559 - -
Cme06g02045 649 SMART blect_4 59 182 IPR001480 -
Cme06g02045 649 Pfam S-locus glycoprotein domain 240 349 IPR000858 GO:0048544
Cme06g02045 649 SUPERFAMILY Protein kinase-like (PK-like) 468 649 IPR011009 -
Cme06g02045 649 SMART ntp_6 372 451 IPR003609 -
Cme06g02045 649 Pfam D-mannose binding lectin 101 208 IPR001480 -
Cme06g02045 649 CDD B_lectin 61 182 IPR001480 -
Cme06g02045 649 Gene3D Hepatocyte Growth Factor 368 446 - -
Cme06g02045 649 SUPERFAMILY alpha-D-mannose-specific plant lectins 102 213 IPR036426 -
Cme06g02045 649 ProSiteProfiles PAN/Apple domain profile. 371 452 IPR003609 -
Cme06g02045 649 Pfam Protein tyrosine and serine/threonine kinase 485 637 IPR001245 GO:0004672|GO:0006468
Cme06g02045 649 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 460 649 - -
Cme06g02045 649 ProSiteProfiles Protein kinase domain profile. 484 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02045 649 Pfam PAN-like domain 372 437 IPR003609 -
Cme06g02045 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Cme06g02045 649 PANTHER - 52 459 - -
Cme06g02045 649 PANTHER - 460 649 - -
Cme06g02045 649 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 52 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02045 Cme-Chr6:25769150 Cme06g02052 Cme-Chr6:25862630 0 dispersed
Cme06g02045 Cme-Chr6:25769150 Cme06g02050 Cme-Chr6:25849332 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64969 PF07714 PK_Tyr_Ser-Thr 3.80E-34 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02045 - - csv:101210952 1129.01