Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02050 ATGTCCACAGCTGCCGTCTCTACGACCAAGTCCACTCGAAGAACCGTTCAATTCCCTTCTCGATGGCTTCATTTTCAAATGATGAAGAAAAATCCAGTCACTCAACGTCAACATCCTTTGGAAATTGCCGTGCTAATCGTGAACACTCATGGCCGCCCCCTCGATATGGACTCATTCTCTCCAGCACTGCTGGTTTTTAACTTACTCCTCTATCTCCTAACTTATGTAGCTGCCACTGATTCCTTAACTGCTCAAGACCCATATCTCAGAGATGGCTTTAGTCTTGTTTCCAGTAATGGAAACTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGCGAGATCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCCGTTTGGGTTGCGAATAGGAACACCCCAATCAATGATTCATCTGGTGTACTGGTGATGAACATTACAACAGGAAATCTTTCACTTTACAGCCATGATTCCACCACCATTGTTTGGACCGCCAGGTTACTGAGAAAAATCTCCAATGGGGTACTCCAATTATTGGACATTGGAAATCTTGTGCTGAGAGATGGGAAAGATGAAAATCCCTTAAACTACTCCTGGCAAAGTTTTGATTATCCTACTGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATTAACAGAAGACTAGACGCTTGGAAGAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAATCTGTCATGTGGAAAGGTTCACAAGAATACTTCAGGCATGGCCCATGGAATGGTGTGAGAGTCAGTAGTAGACCACTAGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAGGATGAAGTTTACTACCAATACTCTGTTCCAAATAAGTCTCATACTGTGATGGTGGTGATGAACCAATCCAATTACTTGCGCATAATGTACTTGTGGTCTCCAACCGAGAGACAGTGGAGACTTTATACTTCATTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCAGCTGATAGTTGGACGGCGGGGGAATTTGCGGACGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGCTGAAATTGCCAGACACAAAGCGTACTTGGGTCAACAAAAGCATGAATCTTGAAGAGTGCAAGCAAAAATGCTTGAGTAATTGCTCTTGTATGGCTTATGCAAATACAAACATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATCGACTTGAAATTGATTCCGGACGCAGGACAGGATTTGTATGTTAAAATGCCAGCATCAGAGTTAGTCAAGCGTGGGGAGGCACAAAAAACTGATAGATTGAAGCCTAAGGTGAAGATTTCTTTGGCTGCGATTGTTGCCAGTTTAGGTTTGGCTGTCCTCTTCATAGGCCTATACATTTTCAAAAAGAGATCAACAGTCAAAGATGGCCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTTTCGATTGATAATAAGTTGGGAGAAGGCGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATATTGCAGTGAAGAGACTTTCACGGAGTTCTGGACAGGGAATGAACGAATTTAAGAATGAAGTAATCCTGATTGCAAAACTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTATGAGTATATGCCAAACAAGAGTTTGGACTTCTTTATATTTGATCGAACACAACGTCAATTATTAGATTGGTCACAACGATACCGCATTATATGTGGAATTGCTAGAGGACTTCTGTATCTTCATCAAGATTCGCGATTGAGGATTATACATCGAGATTTAAAAGCAAGCAACGTTTTACTTGATATGGATATGAATCCAAAAATATCTGATTTTGGTCTTGCCAAAACTTGTGGTGGAGATCAAACTGAAGGGCAAACAATAAAAGTGGTTGGAACTTATGGATATATGGCACCAGAATATGCTTTCGATGGACGATTCTCAGTAAAATCTGATGCTTTTAGTTACGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGGAGTAGAAGTTTCTGCCACTTGAACGATCAAAATGTTATTGCATATGCCTGGCGATTGTGGAAAGAAGGAAATTCAGAGGAATTGATTGACGACGCCATTCGAGAAACATGCATCATTTCGGAGGTATTGAGATGTATCAACATCAGTTTGTTGTGTGTTCAACAAAATCCCGATGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTTCTTTGTCGCAACCAAAACAACCCGGATTTTTCATAGAAAATGAAGCCATTTCAAGGAAAATTAGCTCAAGTAAAGACAAATCAAGTTCAACTAATGAATTAACTATTACACTACCAGATCCAAGATAA 2619 41.08 MSTAAVSTTKSTRRTVQFPSRWLHFQMMKKNPVTQRQHPLEIAVLIVNTHGRPLDMDSFSPALLVFNLLLYLLTYVAATDSLTAQDPYLRDGFSLVSSNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRNTPINDSSGVLVMNITTGNLSLYSHDSTTIVWTARLLRKISNGVLQLLDIGNLVLRDGKDENPLNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGVRVSSRPLGIAPILNFNFVSNEDEVYYQYSVPNKSHTVMVVMNQSNYLRIMYLWSPTERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSADSWTAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKRTWVNKSMNLEECKQKCLSNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMPASELVKRGEAQKTDRLKPKVKISLAAIVASLGLAVLFIGLYIFKKRSTVKDGHEKIEAQDLELPLFDLSLINSATNNFSIDNKLGEGGFGPVYKGKLTNGQDIAVKRLSRSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYRIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGQTIKVVGTYGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNVIAYAWRLWKEGNSEELIDDAIRETCIISEVLRCINISLLCVQQNPDDRPTMSSVVMMLGCEISLSQPKQPGFFIENEAISRKISSSKDKSSSTNELTITLPDPR 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25849332 25853625 - MELO3C016574.2.1 Cme06g02050 331199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02050 872 PANTHER - 79 869 - -
Cme06g02050 872 SMART serkin_6 556 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02050 872 SMART blect_4 86 209 IPR001480 -
Cme06g02050 872 CDD PAN_AP_plant 395 478 - -
Cme06g02050 872 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 79 869 - -
Cme06g02050 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 677 689 IPR008271 GO:0004672|GO:0006468
Cme06g02050 872 Gene3D Phosphorylase Kinase; domain 1 530 631 - -
Cme06g02050 872 SUPERFAMILY Protein kinase-like (PK-like) 540 826 IPR011009 -
Cme06g02050 872 Pfam Protein tyrosine and serine/threonine kinase 557 825 IPR001245 GO:0004672|GO:0006468
Cme06g02050 872 Gene3D - 74 206 IPR036426 -
Cme06g02050 872 ProSiteProfiles Bulb-type lectin domain profile. 80 203 IPR001480 -
Cme06g02050 872 Pfam PAN-like domain 398 463 IPR003609 -
Cme06g02050 872 SMART ntp_6 398 477 IPR003609 -
Cme06g02050 872 ProSiteProfiles Protein kinase domain profile. 556 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02050 872 PIRSF SRK 53 872 IPR024171 GO:0004674
Cme06g02050 872 Pfam S-locus glycoprotein domain 267 375 IPR000858 GO:0048544
Cme06g02050 872 ProSiteProfiles PAN/Apple domain profile. 397 478 IPR003609 -
Cme06g02050 872 CDD STKc_IRAK 562 826 - -
Cme06g02050 872 MobiDBLite consensus disorder prediction 853 872 - -
Cme06g02050 872 CDD B_lectin 88 209 IPR001480 -
Cme06g02050 872 SUPERFAMILY alpha-D-mannose-specific plant lectins 129 240 IPR036426 -
Cme06g02050 872 Pfam D-mannose binding lectin 128 235 IPR001480 -
Cme06g02050 872 MobiDBLite consensus disorder prediction 852 872 - -
Cme06g02050 872 Gene3D Transferase(Phosphotransferase) domain 1 632 837 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00755 Cme-Chr4:8964045 Cme06g02050 Cme-Chr6:25849332 0 dispersed
Cme06g02050 Cme-Chr6:25849332 Cme12g01417 Cme-Chr12:22003631 0 dispersed
Cme06g02045 Cme-Chr6:25769150 Cme06g02050 Cme-Chr6:25849332 0 proximal
Cme06g02050 Cme-Chr6:25849332 Cme06g02052 Cme-Chr6:25862630 0 proximal
Cme06g02050 Cme-Chr6:25849332 Cme06g02051 Cme-Chr6:25854463 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64970 PF07714 PK_Tyr_Ser-Thr 4.10E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02050 - - csv:101210952 1607.04