Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02122 ATGATTTATGAGAATAATAGTAATGGGTTTGTTTGGTTCATTTTCATGGTGATTGGTTTAGGTAAGTTCTTGGTCCATGGGGATAATTCTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTACGACAACACGTTTCATGCCGGATTCGGAATAAACACGGCAGCCGTGAGCGGCGTACTTTTCAGAAGGGGAGAGGCCTGCGGCGCTTGTTTCCTAGTAATGTGCAACTATAACGCAGACCCCAAGTGGTGTCTCCGCCGCCGCGCCGTCACCGTCACCGCCACAAACTTCTGCCCGTCCAATAACAACGGCGGCTGGTGCGACCCCCCTCGGTCCCATTTCGACATGTCGTCACCTGCTTTCCTTACTATTGCTCGTCAAGGCAACGAAGGCATTGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAAAAGAAAAGGAGGGGTCCGATTCACATTGAGAGGGCAATCAAACTTCAACATGGTGATGATATCAAATGTCGGAGGAAGTGGCGATGTGAAGGCTGCATGGGTAAAAGGGTCGAAGATGAGGACGTGGACGCCCATGCACCGAAATTGGGGAGCAAATTGGCAAGCTAACGTCGACCTTCGAAACCAAAGAATGTCATTTAAGCTAAGTTTACACGATGGAAGATCATTGGAGTTTGTCAACGTTATTCCTTCCTCTTGGAGGTTCGGGCAGACATTTTCGTCCATGCTTCAATTCTCCTAG 768 48.31 MIYENNSNGFVWFIFMVIGLGKFLVHGDNSWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGVLFRRGEACGACFLVMCNYNADPKWCLRRRAVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCKRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVKGSKMRTWTPMHRNWGANWQANVDLRNQRMSFKLSLHDGRSLEFVNVIPSSWRFGQTFSSMLQFS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26871468 26875352 - MELO3C016517.2.1 Cme06g02122 331271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02122 255 PANTHER EXPANSIN-A12 8 255 - -
Cme06g02122 255 Pfam Lytic transglycolase 66 150 IPR009009 -
Cme06g02122 255 PANTHER EXPANSIN-A15 8 255 IPR002963 GO:0009664
Cme06g02122 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Cme06g02122 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Cme06g02122 255 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cme06g02122 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cme06g02122 255 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cme06g02122 255 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cme06g02122 255 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Cme06g02122 255 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Cme06g02122 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Cme06g02122 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Cme06g02122 255 SUPERFAMILY Barwin-like endoglucanases 30 178 IPR036908 -
Cme06g02122 255 Gene3D - 22 156 IPR036908 -
Cme06g02122 255 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Cme06g02122 255 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Cme06g02122 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cme06g02122 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cme06g02122 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cme06g02122 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Cme06g02122 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Cme06g02122 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Cme06g02122 255 SMART dpbb_1 66 150 IPR007112 -
Cme06g02122 255 Gene3D - 160 255 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02122 Cme-Chr6:26871468 Cme03g01526 Cme-Chr3:24439410 7.88E-94 dispersed
Cme11g01184 Cme-Chr11:18004777 Cme06g02122 Cme-Chr6:26871468 5.23E-30 dispersed
Cme06g02122 Cme-Chr6:26871468 Cme02g01876 Cme-Chr2:25344916 3.39E-79 transposed
Cme06g02122 Cme-Chr6:26871468 Cme10g00403 Cme-Chr10:2578552 5.13E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02122 - - csv:101204263 525.013