Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02141 ATGTTTTTCCTTGTTTTTACATTCTTCTCTCTTCTAGGCTACTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTGAATTCTCAGACTCTGCTACACTAAGCACTTGGACTGCCACAAACTTCAGCTCAGTTTGTTCATGGGTCGGGATTCAGTGTTCTCATGGACGAGTTATTTCAGTCAACTTGACAGATTTGAATCTTGGTGGCTTTGTTTCACCGTTGATTTCAAATCTTGACCAACTTACTGAGTTGTCTTTCGCAGGAAATAACTTTTCTAGTGGCATTGAAGTAGTGAATTTGAGTTACCTTCGGTTCCTAAACATCTCAAACAACCAGTTCACTGGGACTCTGGACTGGAACTTTTCGAGTCTGCCAAACTTGGAGGTGTTGGATGCCTATAACAACAACTTCAGTGCTCTACTCCCCACTGAGATTTTGAATTTACAGAACCTTAAATACTTAGACCTTGGAGGTAACTTTTTTCATGGAAAAATCCCTGAAAGCTATGGCAATTTAGAAGGGCTGCAATATCTTTCTCTTGCAGGAAATGATTTGGTTGGGAAAATCCCAGCAGCGTTGGGAAATCTTACAAATTTGAGAGTAATTGCCTTGGGCCATTACAATGTTTTTGAAGGGGGACTTCCACCGGAACTTGGGAAGTTGGCCAATTTGGTTGTCATGGACATTGCAGACTGCAATTTGGACGGTCAAATTCCTCATGAACTTGGGAATTTGAAGGCCTTGAACTCTCTATATTTGCATACAAACCTATTCTCAGGTTCGATTCCGAAGCAGTTAGGCAATCTGACAAACTTGGTCAATTTGGATCTATCCAACAATGCACTCACAGGAGAAATCCCATCCGAGTTTGTTGAGCTCAAGCAGCTCAACCTTTACAAGCTCTTCATGAACAAACTTCACGGATCTATTCCAGACTACATAGCAGATTTGCCGAACTTGGAGACATTGGAACTGTGGATGAACAACTTCACCGGCACAATTCCGAAGAATCTTGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCGACAAACAAGCTCACAGGTACAATACCCGAGGGTTTGTGTTCATCAAACCAGCTGAGAATATTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGATGGTTTTGGGACATGTACGAGTCTTACAAAAGTGAGGTTAGGGCAAAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGCTAAATTTAGCAGAGTTTCAGGACAATTACCTATCTGGTACACTTTCAGAAAATTGGGAGAGTTCATCAACACCCATCAAATTAGCGCAACTTAATCTCTCTAACAATCTTCTCTCAGGAACTTTACCATCTTCACTTTCTAATTTGTCTTTTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATCTTAGCAGAAACTCGCTTTCAGGTGAAATTCCACCTGAAATTGGCAATTGTATTCATCTCACTTACCTTGATTTGAGCAGAAACAACCTCTCTGGCCCAATTCCTCCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCGAGAAATCACCTAAATCAATCCCTACCGAAATCAATAGGGACAATGAAGAGCCTGACGATTGCTGATTTCTCCTTCAACGATTTCTCCGGAAAACTACCGGAATCCGGACTTGCTTTCTTCAATGCTTCATCCTTCGCCGGAAATCCTCAGCTCTGCGGCTCTCTCCTTAACAATCCCTGCAACTTCGCAACGACAACAACATCAAAATCGGGAAAAACTCCGACGTATTTCAAGCTAATATTCGCCCTCGGCTTATTAATTTGCTCTCTAGTGTTCGCCGTAGCGGCAGTAGTCAAAGCGAAATCATTCAAACGAAATGGAGCAAGTTCATGGAAAATGACATCATTCCAAAAGCTTGATTTCACCGTCTTCGACGTCTTGGAGTGCGTGAAAGACGGCAACGAGATCGGACGAGGCGGCGCCGGCATCGTCTACCACGGGAAAATGCCGAACGGAGTTGAAATCGCAGTGAAGAAACTTCTAGGGTTCGGCCCTAACAGTCACGATCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGAAACATTGTCAGATTACTCGCATTCTGCTCCAATAAAGAGACAAACCTCCTCGTATACGAATACATGAGGAATGGAAGCTTAGGCGAAGCACTCCACGGAAAAAAAGCCTCGTTCCTTGGATGGAATTTGAGATACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTGATCGTTCATCGAGACGTGAAATCGAACAACATCCTCTTGAATTCAAACTTCGAAGCTCACGTCGCCGATTTCGGATTGGCGAAGTTCATGTTCGACGGCGGCGCGTCGGAATGCATGTCGGTGATCGCCGGATCTTACGGCTACATAGCTCCTGAATATGCATACACGTTGAAAGTCGATGAAAAAAGTGATGTGTATAGTTTTGGAGTCGTGCTATTAGAGCTTTTAACAGGACGTCGACCAGTTGGAGATTTTGGGGATGGAGTGGTTGATATAGCACAATGGTGCAGAAGAGCTGTAACATATGGCGAGAATGAAAACGACATTATTTGTTTAGTTGACAAAAGGGTAGGAATGATACCAAAAGAGGAAGCAAAACACTTATTCTTCATAGCAAAGTTATGTGTGGAAGAGAATAGTGTGGAAAGGCCAACAATGAGAGAAGTAGTTCAGATGTTGGCGGAGTTTCCTCATCAGTCTCCCAGTTGTTTCCAATCTTCCTCATCTTCGTCTCCCTGTCAAAAATTGAAGAACGGCGAGAAGGAAAGAGAACATCAATCAAAGTCCAAACCAGATCATTTAGTTTAA 3000 43.2 MFFLVFTFFSLLGYSSSHSLVSDFHVLLALKQGFEFSDSATLSTWTATNFSSVCSWVGIQCSHGRVISVNLTDLNLGGFVSPLISNLDQLTELSFAGNNFSSGIEVVNLSYLRFLNISNNQFTGTLDWNFSSLPNLEVLDAYNNNFSALLPTEILNLQNLKYLDLGGNFFHGKIPESYGNLEGLQYLSLAGNDLVGKIPAALGNLTNLRVIALGHYNVFEGGLPPELGKLANLVVMDIADCNLDGQIPHELGNLKALNSLYLHTNLFSGSIPKQLGNLTNLVNLDLSNNALTGEIPSEFVELKQLNLYKLFMNKLHGSIPDYIADLPNLETLELWMNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPEGLCSSNQLRILILMNNFLFGPIPDGFGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSTPIKLAQLNLSNNLLSGTLPSSLSNLSFLQILLLNGNQFSGTIPPSIGELNQLLKLDLSRNSLSGEIPPEIGNCIHLTYLDLSRNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSIGTMKSLTIADFSFNDFSGKLPESGLAFFNASSFAGNPQLCGSLLNNPCNFATTTTSKSGKTPTYFKLIFALGLLICSLVFAVAAVVKAKSFKRNGASSWKMTSFQKLDFTVFDVLECVKDGNEIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGDGVVDIAQWCRRAVTYGENENDIICLVDKRVGMIPKEEAKHLFFIAKLCVEENSVERPTMREVVQMLAEFPHQSPSCFQSSSSSSPCQKLKNGEKEREHQSKSKPDHLV 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27146961 27152404 - MELO3C016502.2.1 Cme06g02141 331290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02141 999 SUPERFAMILY RNI-like 68 388 - -
Cme06g02141 999 Pfam Protein tyrosine and serine/threonine kinase 687 957 IPR001245 GO:0004672|GO:0006468
Cme06g02141 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Cme06g02141 999 PANTHER UNNAMED PRODUCT 8 966 - -
Cme06g02141 999 MobiDBLite consensus disorder prediction 980 999 - -
Cme06g02141 999 PRINTS Leucine-rich repeat signature 353 366 - -
Cme06g02141 999 PRINTS Leucine-rich repeat signature 497 510 - -
Cme06g02141 999 SUPERFAMILY Protein kinase-like (PK-like) 673 957 IPR011009 -
Cme06g02141 999 SMART LRR_typ_2 522 545 IPR003591 -
Cme06g02141 999 SMART LRR_typ_2 473 495 IPR003591 -
Cme06g02141 999 SMART LRR_typ_2 326 350 IPR003591 -
Cme06g02141 999 SMART LRR_typ_2 278 302 IPR003591 -
Cme06g02141 999 SMART LRR_typ_2 497 521 IPR003591 -
Cme06g02141 999 SMART LRR_typ_2 351 374 IPR003591 -
Cme06g02141 999 SMART LRR_typ_2 133 156 IPR003591 -
Cme06g02141 999 SMART LRR_typ_2 181 205 IPR003591 -
Cme06g02141 999 SMART serkin_6 684 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02141 999 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515
Cme06g02141 999 Pfam Leucine Rich Repeat 523 544 IPR001611 GO:0005515
Cme06g02141 999 Pfam Leucine Rich Repeat 159 179 IPR001611 GO:0005515
Cme06g02141 999 Gene3D Ribonuclease Inhibitor 129 217 IPR032675 -
Cme06g02141 999 Gene3D Ribonuclease Inhibitor 22 128 IPR032675 -
Cme06g02141 999 Gene3D Ribonuclease Inhibitor 218 317 IPR032675 -
Cme06g02141 999 Gene3D Transferase(Phosphotransferase) domain 1 761 978 - -
Cme06g02141 999 Gene3D Phosphorylase Kinase; domain 1 649 760 - -
Cme06g02141 999 MobiDBLite consensus disorder prediction 963 979 - -
Cme06g02141 999 ProSiteProfiles Protein kinase domain profile. 684 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02141 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 8 966 - -
Cme06g02141 999 MobiDBLite consensus disorder prediction 963 999 - -
Cme06g02141 999 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Cme06g02141 999 Gene3D Ribonuclease Inhibitor 318 622 IPR032675 -
Cme06g02141 999 SUPERFAMILY L domain-like 287 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00458 Cme-Chr4:3646988 Cme06g02141 Cme-Chr6:27146961 0 dispersed
Cme06g02141 Cme-Chr6:27146961 Cme07g01827 Cme-Chr7:23749651 0 dispersed
Cme06g02141 Cme-Chr6:27146961 Cme08g00688 Cme-Chr8:4552890 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64972 PF07714 PK_Tyr_Ser-Thr 6.60E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02141 - - csv:101215633 1860.11