Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02162 GTCTTGCATTCTTGGAAGACTAACAAAAATGCTTTCAAGGCCTTAATAGCTGCGGAGTACAATGGTGTCAAGGTTGATCTTTCCCCAGATTTTACAATGGGCGTGACCAACAAGAGTCCTGAATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTTCTGGAAACACCCGATGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGCTTGAAGGACAGCGGTTTATTTGGCTCTTCTTCCATAGATTGTGGACATGTTGAACAATGGATTGATTTTTCCACATTTGAAATTGATAATAATTTGTCAGTTATTTTGAGGCCTAGATTCGGATATGCTGTTTACCATCCGGGTGTAGAGGAAACCGCTAATGCTGCCCTAAAGCGATCTTTCGGTGCTTTGAACTCCTACCTTGCTTCAAACACATTCCTCGTTGGACACTCCGTGACACTAGCTGATATCATTCTGACATGCAATCTCTATTTGGGATTCACCTATTTGTTGACTAAAAGCTTTACATCTGAGTTCCCCCACGTTGAGAGGTACTTCTGGACATTGGTCAATCAACCAAATTTCAAAAAGATAATTGGTGAGGTAAAGCAGACTGATGCTGTCCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAAGCAAAGGCTGAGCCTAAGAAACAAGAAGAGAAGCCTGCAGAACCTGCTCAGGAGGAGGCACCGAAGCCCAAGGCCAAAAATCCCCTTGACTTGCTTCCTCCTAGTTCGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACTAAGACTAACTTCCGTGAGATTGCAATCAAAGGATTCTGGGACATGTATGACCCAGAAGGGTACTCCCTTTGGTTCTGTGACTACAAATACAACGATGAGAATACCGTTTCATTTGTGACTTTGAACAAAGTTGGTGGGTTCCTCCAGAGAATGGATATTGCTCGGAAGTATGCCTTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGAAAAGAAATCCCACAATTTGTGCTCGACGAGTGTTACGACATGGAGTTGTACGAGTGGAAGAAGGTGGATATCTCGGATGAAGCCCAGAAGGAGAGGGTGAACCAAATGATCGAAGACCAGGAACCATTTGAGGGTGAAGTTCTTTTGGATGCCAAATGCTTCAAGTGA 1224 44.36 VLHSWKTNKNAFKALIAAEYNGVKVDLSPDFTMGVTNKSPEYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSGLFGSSSIDCGHVEQWIDFSTFEIDNNLSVILRPRFGYAVYHPGVEETANAALKRSFGALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYLLTKSFTSEFPHVERYFWTLVNQPNFKKIIGEVKQTDAVPPVKTPEEAAAAAKAKAEPKKQEEKPAEPAQEEAPKPKAKNPLDLLPPSSMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDIARKYAFGKMLVIGSEAPYKVKGLWLFRGKEIPQFVLDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEVLLDAKCFK 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27490900 27492855 - MELO3C016487.2.1 Cme06g02162 331311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02162 407 SMART EF1G_2 246 354 IPR001662 GO:0003746|GO:0006414
Cme06g02162 407 SFLD Glutathione Transferase (cytosolic) 2 186 IPR040079 -
Cme06g02162 407 MobiDBLite consensus disorder prediction 211 250 - -
Cme06g02162 407 CDD GST_C_EF1Bgamma_like 86 206 - -
Cme06g02162 407 CDD GST_N_EF1Bgamma 2 74 - -
Cme06g02162 407 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 407 IPR044628 GO:0004364
Cme06g02162 407 Pfam Glutathione S-transferase, C-terminal domain 125 193 IPR004046 -
Cme06g02162 407 Gene3D Glutaredoxin 1 71 - -
Cme06g02162 407 Pfam Elongation factor 1 gamma, conserved domain 246 354 IPR001662 GO:0003746|GO:0006414
Cme06g02162 407 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 247 407 IPR001662 GO:0003746|GO:0006414
Cme06g02162 407 SUPERFAMILY Thioredoxin-like 1 75 IPR036249 -
Cme06g02162 407 Pfam Glutathione S-transferase, N-terminal domain 4 73 IPR004045 -
Cme06g02162 407 MobiDBLite consensus disorder prediction 219 247 - -
Cme06g02162 407 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 79 IPR004045 -
Cme06g02162 407 SFLD Main (cytGST) 2 186 - -
Cme06g02162 407 SUPERFAMILY GST C-terminal domain-like 70 207 IPR036282 -
Cme06g02162 407 Gene3D - 76 209 - -
Cme06g02162 407 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 247 407 IPR036433 GO:0003746|GO:0006414
Cme06g02162 407 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 83 211 IPR010987 -
Cme06g02162 407 SUPERFAMILY eEF1-gamma domain 248 407 IPR036433 GO:0003746|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02162 Cme-Chr6:27490900 Cme10g01287 Cme-Chr10:13854391 0 dispersed
Cme06g02162 Cme-Chr6:27490900 Cme06g02163 Cme-Chr6:27494649 3.99E-63 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02162 K03233 - csv:101215571 724.161