Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02162 | GTCTTGCATTCTTGGAAGACTAACAAAAATGCTTTCAAGGCCTTAATAGCTGCGGAGTACAATGGTGTCAAGGTTGATCTTTCCCCAGATTTTACAATGGGCGTGACCAACAAGAGTCCTGAATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTTCTGGAAACACCCGATGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGCTTGAAGGACAGCGGTTTATTTGGCTCTTCTTCCATAGATTGTGGACATGTTGAACAATGGATTGATTTTTCCACATTTGAAATTGATAATAATTTGTCAGTTATTTTGAGGCCTAGATTCGGATATGCTGTTTACCATCCGGGTGTAGAGGAAACCGCTAATGCTGCCCTAAAGCGATCTTTCGGTGCTTTGAACTCCTACCTTGCTTCAAACACATTCCTCGTTGGACACTCCGTGACACTAGCTGATATCATTCTGACATGCAATCTCTATTTGGGATTCACCTATTTGTTGACTAAAAGCTTTACATCTGAGTTCCCCCACGTTGAGAGGTACTTCTGGACATTGGTCAATCAACCAAATTTCAAAAAGATAATTGGTGAGGTAAAGCAGACTGATGCTGTCCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAAGCAAAGGCTGAGCCTAAGAAACAAGAAGAGAAGCCTGCAGAACCTGCTCAGGAGGAGGCACCGAAGCCCAAGGCCAAAAATCCCCTTGACTTGCTTCCTCCTAGTTCGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACTAAGACTAACTTCCGTGAGATTGCAATCAAAGGATTCTGGGACATGTATGACCCAGAAGGGTACTCCCTTTGGTTCTGTGACTACAAATACAACGATGAGAATACCGTTTCATTTGTGACTTTGAACAAAGTTGGTGGGTTCCTCCAGAGAATGGATATTGCTCGGAAGTATGCCTTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGAAAAGAAATCCCACAATTTGTGCTCGACGAGTGTTACGACATGGAGTTGTACGAGTGGAAGAAGGTGGATATCTCGGATGAAGCCCAGAAGGAGAGGGTGAACCAAATGATCGAAGACCAGGAACCATTTGAGGGTGAAGTTCTTTTGGATGCCAAATGCTTCAAGTGA | 1224 | 44.36 | VLHSWKTNKNAFKALIAAEYNGVKVDLSPDFTMGVTNKSPEYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSGLFGSSSIDCGHVEQWIDFSTFEIDNNLSVILRPRFGYAVYHPGVEETANAALKRSFGALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYLLTKSFTSEFPHVERYFWTLVNQPNFKKIIGEVKQTDAVPPVKTPEEAAAAAKAKAEPKKQEEKPAEPAQEEAPKPKAKNPLDLLPPSSMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDIARKYAFGKMLVIGSEAPYKVKGLWLFRGKEIPQFVLDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEVLLDAKCFK | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27490900 | 27492855 | - | MELO3C016487.2.1 | Cme06g02162 | 331311 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02162 | 407 | SMART | EF1G_2 | 246 | 354 | IPR001662 | GO:0003746|GO:0006414 | |
Cme06g02162 | 407 | SFLD | Glutathione Transferase (cytosolic) | 2 | 186 | IPR040079 | - | |
Cme06g02162 | 407 | MobiDBLite | consensus disorder prediction | 211 | 250 | - | - | |
Cme06g02162 | 407 | CDD | GST_C_EF1Bgamma_like | 86 | 206 | - | - | |
Cme06g02162 | 407 | CDD | GST_N_EF1Bgamma | 2 | 74 | - | - | |
Cme06g02162 | 407 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 407 | IPR044628 | GO:0004364 | |
Cme06g02162 | 407 | Pfam | Glutathione S-transferase, C-terminal domain | 125 | 193 | IPR004046 | - | |
Cme06g02162 | 407 | Gene3D | Glutaredoxin | 1 | 71 | - | - | |
Cme06g02162 | 407 | Pfam | Elongation factor 1 gamma, conserved domain | 246 | 354 | IPR001662 | GO:0003746|GO:0006414 | |
Cme06g02162 | 407 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 247 | 407 | IPR001662 | GO:0003746|GO:0006414 | |
Cme06g02162 | 407 | SUPERFAMILY | Thioredoxin-like | 1 | 75 | IPR036249 | - | |
Cme06g02162 | 407 | Pfam | Glutathione S-transferase, N-terminal domain | 4 | 73 | IPR004045 | - | |
Cme06g02162 | 407 | MobiDBLite | consensus disorder prediction | 219 | 247 | - | - | |
Cme06g02162 | 407 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 79 | IPR004045 | - | |
Cme06g02162 | 407 | SFLD | Main (cytGST) | 2 | 186 | - | - | |
Cme06g02162 | 407 | SUPERFAMILY | GST C-terminal domain-like | 70 | 207 | IPR036282 | - | |
Cme06g02162 | 407 | Gene3D | - | 76 | 209 | - | - | |
Cme06g02162 | 407 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 247 | 407 | IPR036433 | GO:0003746|GO:0006414 | |
Cme06g02162 | 407 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 83 | 211 | IPR010987 | - | |
Cme06g02162 | 407 | SUPERFAMILY | eEF1-gamma domain | 248 | 407 | IPR036433 | GO:0003746|GO:0006414 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g02162 | Cme-Chr6:27490900 | Cme10g01287 | Cme-Chr10:13854391 | 0 | dispersed | |
Cme06g02162 | Cme-Chr6:27490900 | Cme06g02163 | Cme-Chr6:27494649 | 3.99E-63 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02162 | K03233 | - | csv:101215571 | 724.161 |