Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02163 ATGGCTCTGGTCCTGCATTCTTGGACTCCTAGCAAAAATGTTTACAAGGTTTTAATAGCTGCGGAATACAATGGTGTCAAAGTTGACCTTGCCCCAGACTTCACCATGGGTGTAAGCAATAAGAGTCCTGAATTTCTTAAAATGAATCCTATTGGGAAGGTTCCTCTTCTGCAAACACCCGATGGTGCTATCTTTGAGAGCAATGCTATTACCCGCTATGTTGCTCGCTTGAAGGACAGCGGTTTATATGGCTCTTCTCCAATTGATTATGGACATATTGAGCAATGGATTGATTTCTCTTCGTTGGAAATTGATAGTCATATTTCAACTATTCTGGCGCCTAGATATGGATATGGTGTTTACTATGCTCCTACGGATGCTGTCCCACCAGTGAAAACTCCTGAAGAGGCTGCAGCAGCTGCCAAAGCAAAGGCTGAGCCCAAGAAACAAGAAGAGAAGCCTGCAGCACCTGCTGAGGAGGCACCAAAGCCCAAAGCCAAAAACCCCCTTGACTTGCTTCCTCCTAGTTCGATGATTTTGGATGATTGGAAACGACTCTACTCGAACACTAAGACTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCAGAAGGGTACTCCCTTTGGTTCTGTGACTACAAATACAACGATGAGAATACCGTTTCATTTGTGACTTTGAACAAAGTTGGTGGATTCCTCCAGAGAATGGATATTGCTCGGAAGTATGCCTTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGAAAAGAAATCCCCCAATTTGTGCTTGATGAGTGCTACGATATGGAGCTGTACGAGTGGAAGAAGGTGGATGTCTCGGATGAAGCCCAGAAGGAGAGGGTGAACCAAATGATCGAAGACCAGGAACCATTTGAGGGTGAAGCTCTTTTGGACGCCAAATGCTTCAAGTGA 981 45.26 MALVLHSWTPSKNVYKVLIAAEYNGVKVDLAPDFTMGVSNKSPEFLKMNPIGKVPLLQTPDGAIFESNAITRYVARLKDSGLYGSSPIDYGHIEQWIDFSSLEIDSHISTILAPRYGYGVYYAPTDAVPPVKTPEEAAAAAKAKAEPKKQEEKPAAPAEEAPKPKAKNPLDLLPPSSMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDIARKYAFGKMLVIGSEAPYKVKGLWLFRGKEIPQFVLDECYDMELYEWKKVDVSDEAQKERVNQMIEDQEPFEGEALLDAKCFK 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27494649 27497482 - MELO3C031886.2.1 Cme06g02163 331312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02163 326 SUPERFAMILY Thioredoxin-like 2 79 IPR036249 -
Cme06g02163 326 SMART EF1G_2 165 273 IPR001662 GO:0003746|GO:0006414
Cme06g02163 326 Pfam Glutathione S-transferase, N-terminal domain 2 76 IPR004045 -
Cme06g02163 326 MobiDBLite consensus disorder prediction 134 169 - -
Cme06g02163 326 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 166 326 IPR036433 GO:0003746|GO:0006414
Cme06g02163 326 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cme06g02163 326 Gene3D Glutaredoxin 1 74 - -
Cme06g02163 326 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 125 IPR044628 GO:0004364
Cme06g02163 326 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 125 326 IPR044628 GO:0004364
Cme06g02163 326 Pfam Elongation factor 1 gamma, conserved domain 165 273 IPR001662 GO:0003746|GO:0006414
Cme06g02163 326 CDD GST_N_EF1Bgamma 3 77 - -
Cme06g02163 326 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 166 326 IPR001662 GO:0003746|GO:0006414
Cme06g02163 326 MobiDBLite consensus disorder prediction 139 166 - -
Cme06g02163 326 SUPERFAMILY eEF1-gamma domain 167 326 IPR036433 GO:0003746|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02163 Cme-Chr6:27494649 Cme10g01287 Cme-Chr10:13854391 1.37E-52 dispersed
Cme06g02162 Cme-Chr6:27490900 Cme06g02163 Cme-Chr6:27494649 3.99E-63 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02163 K03233 - csv:101207459 349.747