Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02178 | ATGTCTACAGCAAAGCTTCTTCGCCATATCCCTGACCCCATCGATGAAAATCATGACAACAACCGTGAAATTGACCCCTCTGACAGGCTTGTCGGATCGCCCTTCGCCGAAGATAGAGATTCTGTTTCCCTTACTCTTGGCGAGCCACTCTTGCGTACTAGTACCGCCAGGATCAGTACTACCTCCCAGCTTGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGTACTTTCAGGCATTTGTAGTATACGTTGGTTCCAATAGTGTGTTAGCTGTTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCAAGCACCTTATTTGTGAAGATTTTTGGTTCCATATTTGCTGTTGCCGGGGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATATCGGTTGACTTGGAAGTGGCTCAGATATTTTAAAAATGATAGGGACAGGCGGGATTTAATCACTTGTGGTGCAGCAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTGGGTGGCGTTCTCTTTGCACTTGAAGAGGCAGCTTCATGGTCTCTCTCTCTCTTTCTCTCTCTCCACAGCACCGAAATGTCCATAATCCATGTTGTCGAGATTGTTAGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCTGTTGTCTTAAGGAGTTTCATGGAATTTTGCCGAGGGGGACAATGTGGGTTATTTGGCGAAGGGGGTCTCATCATGTTCAAGATCAATACTGAAAACTCCACTTATGGTACCCCAGATCTTATTGCAATTGTTTTACTTGGAGTTATTGGCGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGCTAAGATTGAATTGCAGGAGAGGTCCCGGCACGAAACTTATCCTTGTTGTTGCCGTTTCCATATTGACAACTTGTGTCTCATTTGGTCTTCCTTGGTTATCACAATGTTTACCATGCCCAACTGACTTGGATGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCTTTATTTTTCAATACCAATGATGATGCCATCCGAAACCTGTTCACATCTGCTAATGACAAGCACTTTCAGCTCTCCTCACTATTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTTATTCTGGCCGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTCTGTGTCATACTCCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCAAAGTCGGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTTTCTGGGATCGAAAAGGTCGATAACATTGTCCATGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTACTTGTTTTGCTTAGAGAAAAAAAATTTACTAAGAAAAAGGTGTCACTTAGATCAGAAATTTGGAGGGGCTTCAAAGCACATGATTTTGCAAAACCAGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGAATTCAACGAGGAGGAGCTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCACCCTACACAGTTGTAGAATCAATGTCACTAGCCAAAGCCGCAATTCTCTTTCATGCACTGGGCTTGAGGCACTTGTTGGTGGTTCCAAAGACACCTGGGAGGCCTCCTATTGCTGGAATTCTTACACGACACGACTTCATGCCGGAGCATATTCTGGGACTTTACCCGCATCTCAACCCCCACAAGTAG | 2226 | 44.92 | MSTAKLLRHIPDPIDENHDNNREIDPSDRLVGSPFAEDRDSVSLTLGEPLLRTSTARISTTSQLAIVGSNICPIESLDYEYFQAFVVYVGSNSVLAVAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWSLSLFLSLHSTEMSIIHVVEIVRWRSALLWRTFFTTAVVAVVLRSFMEFCRGGQCGLFGEGGLIMFKINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKLRLNCRRGPGTKLILVVAVSILTTCVSFGLPWLSQCLPCPTDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSANDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLREKKFTKKKVSLRSEIWRGFKAHDFAKPGSGKGVKLEDLEFNEEELEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNPHK | 741 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27765433 | 27773490 | + | MELO3C016475.2.1 | Cme06g02178 | 331327 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02178 | 741 | Pfam | Voltage gated chloride channel | 96 | 529 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cme06g02178 | 741 | Pfam | CBS domain | 677 | 725 | IPR000644 | - | |
Cme06g02178 | 741 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-C | 45 | 81 | - | - | |
Cme06g02178 | 741 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-C | 81 | 232 | - | - | |
Cme06g02178 | 741 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 45 | 81 | - | - | |
Cme06g02178 | 741 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-C | 250 | 741 | - | - | |
Cme06g02178 | 741 | SUPERFAMILY | Clc chloride channel | 81 | 550 | IPR014743 | - | |
Cme06g02178 | 741 | PRINTS | Chloride channel signature | 479 | 495 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | PRINTS | Chloride channel signature | 108 | 125 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | PRINTS | Chloride channel signature | 139 | 158 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | PRINTS | Chloride channel signature | 447 | 467 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | PRINTS | Chloride channel signature | 497 | 516 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | PRINTS | Chloride channel signature | 535 | 549 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | PRINTS | Chloride channel signature | 203 | 222 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cme06g02178 | 741 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 551 | 728 | - | - | |
Cme06g02178 | 741 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 250 | 741 | - | - | |
Cme06g02178 | 741 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 81 | 232 | - | - | |
Cme06g02178 | 741 | Gene3D | Clc chloride channel | 52 | 549 | - | - | |
Cme06g02178 | 741 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
Cme06g02178 | 741 | Gene3D | - | 573 | 712 | IPR046342 | - | |
Cme06g02178 | 741 | PRINTS | Plant CLC chloride channel signature | 261 | 271 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cme06g02178 | 741 | PRINTS | Plant CLC chloride channel signature | 399 | 415 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cme06g02178 | 741 | PRINTS | Plant CLC chloride channel signature | 279 | 286 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cme06g02178 | 741 | SUPERFAMILY | CBS-domain pair | 552 | 726 | IPR046342 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g00138 | Cme-Chr3:1815614 | Cme06g02178 | Cme-Chr6:27765433 | 1.12E-21 | dispersed | |
Cme05g01882 | Cme-Chr5:27586544 | Cme06g02178 | Cme-Chr6:27765433 | 0 | dispersed | |
Cme06g02178 | Cme-Chr6:27765433 | Cme01g00866 | Cme-Chr1:9866824 | 3.04E-14 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02178 | K05016 | - | csv:101209987 | 1099.73 |