Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02178 ATGTCTACAGCAAAGCTTCTTCGCCATATCCCTGACCCCATCGATGAAAATCATGACAACAACCGTGAAATTGACCCCTCTGACAGGCTTGTCGGATCGCCCTTCGCCGAAGATAGAGATTCTGTTTCCCTTACTCTTGGCGAGCCACTCTTGCGTACTAGTACCGCCAGGATCAGTACTACCTCCCAGCTTGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGTACTTTCAGGCATTTGTAGTATACGTTGGTTCCAATAGTGTGTTAGCTGTTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCAAGCACCTTATTTGTGAAGATTTTTGGTTCCATATTTGCTGTTGCCGGGGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATATCGGTTGACTTGGAAGTGGCTCAGATATTTTAAAAATGATAGGGACAGGCGGGATTTAATCACTTGTGGTGCAGCAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTGGGTGGCGTTCTCTTTGCACTTGAAGAGGCAGCTTCATGGTCTCTCTCTCTCTTTCTCTCTCTCCACAGCACCGAAATGTCCATAATCCATGTTGTCGAGATTGTTAGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCTGTTGTCTTAAGGAGTTTCATGGAATTTTGCCGAGGGGGACAATGTGGGTTATTTGGCGAAGGGGGTCTCATCATGTTCAAGATCAATACTGAAAACTCCACTTATGGTACCCCAGATCTTATTGCAATTGTTTTACTTGGAGTTATTGGCGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGCTAAGATTGAATTGCAGGAGAGGTCCCGGCACGAAACTTATCCTTGTTGTTGCCGTTTCCATATTGACAACTTGTGTCTCATTTGGTCTTCCTTGGTTATCACAATGTTTACCATGCCCAACTGACTTGGATGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCTTTATTTTTCAATACCAATGATGATGCCATCCGAAACCTGTTCACATCTGCTAATGACAAGCACTTTCAGCTCTCCTCACTATTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTTATTCTGGCCGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTCTGTGTCATACTCCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCAAAGTCGGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTTTCTGGGATCGAAAAGGTCGATAACATTGTCCATGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTACTTGTTTTGCTTAGAGAAAAAAAATTTACTAAGAAAAAGGTGTCACTTAGATCAGAAATTTGGAGGGGCTTCAAAGCACATGATTTTGCAAAACCAGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGAATTCAACGAGGAGGAGCTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCACCCTACACAGTTGTAGAATCAATGTCACTAGCCAAAGCCGCAATTCTCTTTCATGCACTGGGCTTGAGGCACTTGTTGGTGGTTCCAAAGACACCTGGGAGGCCTCCTATTGCTGGAATTCTTACACGACACGACTTCATGCCGGAGCATATTCTGGGACTTTACCCGCATCTCAACCCCCACAAGTAG 2226 44.92 MSTAKLLRHIPDPIDENHDNNREIDPSDRLVGSPFAEDRDSVSLTLGEPLLRTSTARISTTSQLAIVGSNICPIESLDYEYFQAFVVYVGSNSVLAVAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWSLSLFLSLHSTEMSIIHVVEIVRWRSALLWRTFFTTAVVAVVLRSFMEFCRGGQCGLFGEGGLIMFKINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKLRLNCRRGPGTKLILVVAVSILTTCVSFGLPWLSQCLPCPTDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSANDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLREKKFTKKKVSLRSEIWRGFKAHDFAKPGSGKGVKLEDLEFNEEELEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNPHK 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27765433 27773490 + MELO3C016475.2.1 Cme06g02178 331327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02178 741 Pfam Voltage gated chloride channel 96 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 MobiDBLite consensus disorder prediction 1 25 - -
Cme06g02178 741 Pfam CBS domain 677 725 IPR000644 -
Cme06g02178 741 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 45 81 - -
Cme06g02178 741 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 81 232 - -
Cme06g02178 741 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 45 81 - -
Cme06g02178 741 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 250 741 - -
Cme06g02178 741 SUPERFAMILY Clc chloride channel 81 550 IPR014743 -
Cme06g02178 741 PRINTS Chloride channel signature 479 495 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 PRINTS Chloride channel signature 108 125 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 PRINTS Chloride channel signature 139 158 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 PRINTS Chloride channel signature 447 467 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 PRINTS Chloride channel signature 497 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 PRINTS Chloride channel signature 535 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 PRINTS Chloride channel signature 203 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cme06g02178 741 CDD CBS_pair_voltage-gated_CLC_euk_bac 551 728 - -
Cme06g02178 741 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 250 741 - -
Cme06g02178 741 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 81 232 - -
Cme06g02178 741 Gene3D Clc chloride channel 52 549 - -
Cme06g02178 741 MobiDBLite consensus disorder prediction 9 25 - -
Cme06g02178 741 Gene3D - 573 712 IPR046342 -
Cme06g02178 741 PRINTS Plant CLC chloride channel signature 261 271 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme06g02178 741 PRINTS Plant CLC chloride channel signature 399 415 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme06g02178 741 PRINTS Plant CLC chloride channel signature 279 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cme06g02178 741 SUPERFAMILY CBS-domain pair 552 726 IPR046342 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00138 Cme-Chr3:1815614 Cme06g02178 Cme-Chr6:27765433 1.12E-21 dispersed
Cme05g01882 Cme-Chr5:27586544 Cme06g02178 Cme-Chr6:27765433 0 dispersed
Cme06g02178 Cme-Chr6:27765433 Cme01g00866 Cme-Chr1:9866824 3.04E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02178 K05016 - csv:101209987 1099.73