Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02196 CAACCCTACGCACAAAAACTCCTTCCAATTAGTTTTGCGTCTTCAGCCCCTTGCCTACGCTTCAAGCACCTGTTGCCGCCAACCCATCGCGCCACCGACTGGCTCTGCCTCCGCTCGATCGTCGGCCATCCAAGCGTATCCGGCAAGTTGCCGGAAACTTCACTCTCCATCTCTCTCTACGACCCGTTCCATCACAGCCGCGCGTCGCCAATCTCCTGCCAGCCATCGCCACCACTGCCATTCGCCGGATTCCGCGTTCGCCTGCCGTCTTCCACCGGTCTCTGCCTCTATCACCGGATTATCTTGCGTTTGGTGGATTTGGAGTGTCTTAAGCTGTTTTCCTGCAGACTCAGAAGTTGTTTCAAAGGAATTTTAGTATGTTTTGCTCACACAGCCATGTCTCTCCACAACCATGTTGATGAAATTGACGTTGAGCATCGTGCTGACAAGGAAGATGGTGTGGTTGATGAGGACATGGAAGTTCTTCAGAGAGCCTATAGGCTTGTTGGTGTTAATCCTGAGGATTATATTCATCCCAGGTCGTCATCAATTACTGCTGGAGACGCTGATCCTGGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAGATATTCAGAATCGGTTCTCGATTGTGGCTGATGAGCAGCCACTGAGTACTCTTTCACCAGTGTCAGCAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCTATACAGCGGCGCTTTGCAGCGTATGAAAGTGATACTTTGAGCAATAAACCCGATCAGTCTCGTGACTATGATGGGTCTCTGAAGATGGATTCTGACGACATAGCTGTTGAGAGCCAGACATCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATAGAGGAGAACAAAAAACTCAGAAAACGTTGCAAAATTCTCAAAGATTTCCAGTGTTCATGTAAGCGAAGAACAAGTTCTGCACTGTCTCAAATGATAGACCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGGAATGTATTATGGCCCGGCTGAGAATTCTCATGTTGCGTGTCACAGAATGGCATTGGCAAAGTTTCCCCGTGTTGATCGAAAGAAATGGTCCATTGTAGAAAGGGAGAATCTTGGGAAGGGAATAAGACAGCAGTTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAATTCAGTGGGCAACAAGGAGTTTCTGGAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGATCTTGACATCGCTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTACCTTCAGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTGCAAGTGAGGATAAAAATCTTTTGTTTACTATCCAACAGAAGGGCTTGAATAACTGGATTGAGATAGCAGTTTCATTGGGCACAAATAGAACTCCCTTCCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTTATTTCACTCCATATGAAGACGTTCGTTTGAAAATTGCTGTAATGCTCTTTGGGCCCAAAAATTGGAACAAGAAAGCAGAATTTTTGCCTGGTCGGAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAGTGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGTACAGATAATGAGTGTCGCAGGAGATGGAAGAAGTTATTTCCCGATGAAGTTCCCTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTCATTAGCAACTTTGTTGATAGGGAAACAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCCAAATACAGATTTATTATGTAATACTGATGGTCCAAGACCTGTCCCAAAAAGAAATGTGAAAACAAGAAAGACGCCCGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTATCAGAGGTTTCAGACGGATGCAACTGCTCAGGTGGGTATTGCATATAATACCTCTTTTGTCCCAGAAGAGGTTCAATCTTCAAAGCCTCAAAGGAAACGAAATAGACGTGGAGCTTCTAATGCAAAGAGAATAGGGGTACCGGACCTACGTTCTGACAGCGAGTGGTGTGCTAAACAGAATTTGGACACTCAGAGCCTTGGGTTGCAGCTGAATAGTAAGGAATCTGATAGGACCAACAGTGACTGTACCGAGACTGTCGATGAGAACATTCTGGAAGTTTTTGAGAACAAAGTTGCAGAGAAGCTTACTGAAAAAATTGCATGCTTCTCGGAACAAAAAAAAAATCAAAACTCAACCGGATCTTCTGGAGTCTCAGTATTGTCGGAAATGACTAGCGGCTTCGTTGACTATAATCCCTCTATCCTCACAGATACAACATTGTTAGCTAGTACTACTGTGGATGATATCGAAGAATTGAAGGGCAAGAGTGTTGCAGACAGGGATCTGGATGACAGTAACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCCGGACAGTTGACAGTGAAGGCGTAGACAGTTATTCTGTGGACGAATTTACAGCTAAAAGCAATGGGGTTTGCAATCCCACCCAAGGCAGGAGGAAGAAAAATGGCAAAACATCAAATAACAGCCACGATAATTTGTTTCTTCCTAGTCAACAAATTGAGCAAGAGACATTGGGAACGAAGAAGCCTCATCGTCATAATCAATCAAAGAAGAGAAAACATAACAATACAGGTACAAGTACGTTAGGAACATTGGAGGCAGTTGAGGAGGTTGATGACTGCACTCTCTTGGGGTTCTTGCAAAAAAGATTGAAGAGGACGGCAGTGACACATAACGAGACAGTTGATTGCAGTTCTAGTACTCCTTTAAATGTTGATGATGACGATAATGAGCCTACCATTGCCTCTTTTCTTAATAAATTGAAGAGAAAAAAGCATCAGCGGCCTAGTGGTTGTGAGTTAAATTAA 3417 44.1 QPYAQKLLPISFASSAPCLRFKHLLPPTHRATDWLCLRSIVGHPSVSGKLPETSLSISLYDPFHHSRASPISCQPSPPLPFAGFRVRLPSSTGLCLYHRIILRLVDLECLKLFSCRLRSCFKGILVCFAHTAMSLHNHVDEIDVEHRADKEDGVVDEDMEVLQRAYRLVGVNPEDYIHPRSSSITAGDADPGSDSDDVDDFELLRDIQNRFSIVADEQPLSTLSPVSADEEEDEFEMLRSIQRRFAAYESDTLSNKPDQSRDYDGSLKMDSDDIAVESQTSSKRPSMLAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQCSCKRRTSSALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPAENSHVACHRMALAKFPRVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQFSGQQGVSGDSDDLDNILASIKDLDIAPEKIREFLPKVNWDKLASMYLQGRSGAECEARWLNFEDPLINRDPWTASEDKNLLFTIQQKGLNNWIEIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTKRGYFTPYEDVRLKIAVMLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPDEVPLLQEARKIQKAALISNFVDRETERPALGPADFRPRPNTDLLCNTDGPRPVPKRNVKTRKTPVSRNEKSATGDAPKKRKSNYQRFQTDATAQVGIAYNTSFVPEEVQSSKPQRKRNRRGASNAKRIGVPDLRSDSEWCAKQNLDTQSLGLQLNSKESDRTNSDCTETVDENILEVFENKVAEKLTEKIACFSEQKKNQNSTGSSGVSVLSEMTSGFVDYNPSILTDTTLLASTTVDDIEELKGKSVADRDLDDSNSFSLPHSCLELRTVDSEGVDSYSVDEFTAKSNGVCNPTQGRRKKNGKTSNNSHDNLFLPSQQIEQETLGTKKPHRHNQSKKRKHNNTGTSTLGTLEAVEEVDDCTLLGFLQKRLKRTAVTHNETVDCSSSTPLNVDDDDNEPTIASFLNKLKRKKHQRPSGCELN 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28093865 28111625 + MELO3C016456.2.1 Cme06g02196 331345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 616 663 IPR017930 -
Cme06g02196 1138 CDD SANT 620 661 IPR001005 -
Cme06g02196 1138 SUPERFAMILY Homeodomain-like 543 613 IPR009057 -
Cme06g02196 1138 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 148 1065 - -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 778 801 - -
Cme06g02196 1138 Coils Coil 899 919 - -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 506 558 IPR001005 -
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 506 558 IPR017930 -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 744 803 - -
Cme06g02196 1138 SMART sant 410 507 IPR001005 -
Cme06g02196 1138 SMART sant 510 560 IPR001005 -
Cme06g02196 1138 SMART sant 563 612 IPR001005 -
Cme06g02196 1138 SMART sant 616 665 IPR001005 -
Cme06g02196 1138 SMART sant 668 716 IPR001005 -
Cme06g02196 1138 Gene3D - 508 559 - -
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 664 718 IPR017930 -
Cme06g02196 1138 SUPERFAMILY Homeodomain-like 487 555 IPR009057 -
Cme06g02196 1138 Gene3D - 563 613 - -
Cme06g02196 1138 Gene3D - 615 669 - -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 1003 1040 - -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 820 846 - -
Cme06g02196 1138 Gene3D - 671 716 - -
Cme06g02196 1138 SUPERFAMILY Homeodomain-like 614 710 IPR009057 -
Cme06g02196 1138 CDD SANT 566 610 IPR001005 -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 1003 1064 - -
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 559 614 IPR017930 -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 179 198 - -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 664 714 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 564 608 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 617 663 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 670 713 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 511 556 IPR001005 -
Cme06g02196 1138 CDD SANT 671 714 IPR001005 -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 559 610 IPR001005 -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 612 663 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02196 Cme-Chr6:28093865 Cme04g02621 Cme-Chr4:32085347 4.08E-14 dispersed
Cme06g02196 Cme-Chr6:28093865 Cme03g01729 Cme-Chr3:25877481 1.70E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41534 PF00249 Myb_DNA-binding 7.70E-08 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02196 K09422 - csv:101216287 1838.16