Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02196 CAACCCTACGCACAAAAACTCCTTCCAATTAGTTTTGCGTCTTCAGCCCCTTGCCTACGCTTCAAGCACCTGTTGCCGCCAACCCATCGCGCCACCGACTGGCTCTGCCTCCGCTCGATCGTCGGCCATCCAAGCGTATCCGGCAAGTTGCCGGAAACTTCACTCTCCATCTCTCTCTACGACCCGTTCCATCACAGCCGCGCGTCGCCAATCTCCTGCCAGCCATCGCCACCACTGCCATTCGCCGGATTCCGCGTTCGCCTGCCGTCTTCCACCGGTCTCTGCCTCTATCACCGGATTATCTTGCGTTTGGTGGATTTGGAGTGTCTTAAGCTGTTTTCCTGCAGACTCAGAAGTTGTTTCAAAGGAATTTTAGTATGTTTTGCTCACACAGCCATGTCTCTCCACAACCATGTTGATGAAATTGACGTTGAGCATCGTGCTGACAAGGAAGATGGTGTGGTTGATGAGGACATGGAAGTTCTTCAGAGAGCCTATAGGCTTGTTGGTGTTAATCCTGAGGATTATATTCATCCCAGGTCGTCATCAATTACTGCTGGAGACGCTGATCCTGGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAGATATTCAGAATCGGTTCTCGATTGTGGCTGATGAGCAGCCACTGAGTACTCTTTCACCAGTGTCAGCAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCTATACAGCGGCGCTTTGCAGCGTATGAAAGTGATACTTTGAGCAATAAACCCGATCAGTCTCGTGACTATGATGGGTCTCTGAAGATGGATTCTGACGACATAGCTGTTGAGAGCCAGACATCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATAGAGGAGAACAAAAAACTCAGAAAACGTTGCAAAATTCTCAAAGATTTCCAGTGTTCATGTAAGCGAAGAACAAGTTCTGCACTGTCTCAAATGATAGACCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGGAATGTATTATGGCCCGGCTGAGAATTCTCATGTTGCGTGTCACAGAATGGCATTGGCAAAGTTTCCCCGTGTTGATCGAAAGAAATGGTCCATTGTAGAAAGGGAGAATCTTGGGAAGGGAATAAGACAGCAGTTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAATTCAGTGGGCAACAAGGAGTTTCTGGAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGATCTTGACATCGCTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTACCTTCAGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTGCAAGTGAGGATAAAAATCTTTTGTTTACTATCCAACAGAAGGGCTTGAATAACTGGATTGAGATAGCAGTTTCATTGGGCACAAATAGAACTCCCTTCCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAACGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTTATTTCACTCCATATGAAGACGTTCGTTTGAAAATTGCTGTAATGCTCTTTGGGCCCAAAAATTGGAACAAGAAAGCAGAATTTTTGCCTGGTCGGAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAGTGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGTACAGATAATGAGTGTCGCAGGAGATGGAAGAAGTTATTTCCCGATGAAGTTCCCTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTCATTAGCAACTTTGTTGATAGGGAAACAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCCAAATACAGATTTATTATGTAATACTGATGGTCCAAGACCTGTCCCAAAAAGAAATGTGAAAACAAGAAAGACGCCCGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTATCAGAGGTTTCAGACGGATGCAACTGCTCAGGTGGGTATTGCATATAATACCTCTTTTGTCCCAGAAGAGGTTCAATCTTCAAAGCCTCAAAGGAAACGAAATAGACGTGGAGCTTCTAATGCAAAGAGAATAGGGGTACCGGACCTACGTTCTGACAGCGAGTGGTGTGCTAAACAGAATTTGGACACTCAGAGCCTTGGGTTGCAGCTGAATAGTAAGGAATCTGATAGGACCAACAGTGACTGTACCGAGACTGTCGATGAGAACATTCTGGAAGTTTTTGAGAACAAAGTTGCAGAGAAGCTTACTGAAAAAATTGCATGCTTCTCGGAACAAAAAAAAAATCAAAACTCAACCGGATCTTCTGGAGTCTCAGTATTGTCGGAAATGACTAGCGGCTTCGTTGACTATAATCCCTCTATCCTCACAGATACAACATTGTTAGCTAGTACTACTGTGGATGATATCGAAGAATTGAAGGGCAAGAGTGTTGCAGACAGGGATCTGGATGACAGTAACAGTTTCTCGTTACCGCACAGTTGCTTAGAACTCCGGACAGTTGACAGTGAAGGCGTAGACAGTTATTCTGTGGACGAATTTACAGCTAAAAGCAATGGGGTTTGCAATCCCACCCAAGGCAGGAGGAAGAAAAATGGCAAAACATCAAATAACAGCCACGATAATTTGTTTCTTCCTAGTCAACAAATTGAGCAAGAGACATTGGGAACGAAGAAGCCTCATCGTCATAATCAATCAAAGAAGAGAAAACATAACAATACAGGTACAAGTACGTTAGGAACATTGGAGGCAGTTGAGGAGGTTGATGACTGCACTCTCTTGGGGTTCTTGCAAAAAAGATTGAAGAGGACGGCAGTGACACATAACGAGACAGTTGATTGCAGTTCTAGTACTCCTTTAAATGTTGATGATGACGATAATGAGCCTACCATTGCCTCTTTTCTTAATAAATTGAAGAGAAAAAAGCATCAGCGGCCTAGTGGTTGTGAGTTAAATTAA 3417 44.1 QPYAQKLLPISFASSAPCLRFKHLLPPTHRATDWLCLRSIVGHPSVSGKLPETSLSISLYDPFHHSRASPISCQPSPPLPFAGFRVRLPSSTGLCLYHRIILRLVDLECLKLFSCRLRSCFKGILVCFAHTAMSLHNHVDEIDVEHRADKEDGVVDEDMEVLQRAYRLVGVNPEDYIHPRSSSITAGDADPGSDSDDVDDFELLRDIQNRFSIVADEQPLSTLSPVSADEEEDEFEMLRSIQRRFAAYESDTLSNKPDQSRDYDGSLKMDSDDIAVESQTSSKRPSMLAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQCSCKRRTSSALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPAENSHVACHRMALAKFPRVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQFSGQQGVSGDSDDLDNILASIKDLDIAPEKIREFLPKVNWDKLASMYLQGRSGAECEARWLNFEDPLINRDPWTASEDKNLLFTIQQKGLNNWIEIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAIFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTKRGYFTPYEDVRLKIAVMLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPDEVPLLQEARKIQKAALISNFVDRETERPALGPADFRPRPNTDLLCNTDGPRPVPKRNVKTRKTPVSRNEKSATGDAPKKRKSNYQRFQTDATAQVGIAYNTSFVPEEVQSSKPQRKRNRRGASNAKRIGVPDLRSDSEWCAKQNLDTQSLGLQLNSKESDRTNSDCTETVDENILEVFENKVAEKLTEKIACFSEQKKNQNSTGSSGVSVLSEMTSGFVDYNPSILTDTTLLASTTVDDIEELKGKSVADRDLDDSNSFSLPHSCLELRTVDSEGVDSYSVDEFTAKSNGVCNPTQGRRKKNGKTSNNSHDNLFLPSQQIEQETLGTKKPHRHNQSKKRKHNNTGTSTLGTLEAVEEVDDCTLLGFLQKRLKRTAVTHNETVDCSSSTPLNVDDDDNEPTIASFLNKLKRKKHQRPSGCELN 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28093865 28111625 + MELO3C016456.2.1 Cme06g02196 331345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 616 663 IPR017930 -
Cme06g02196 1138 CDD SANT 620 661 IPR001005 -
Cme06g02196 1138 SUPERFAMILY Homeodomain-like 543 613 IPR009057 -
Cme06g02196 1138 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 148 1065 - -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 778 801 - -
Cme06g02196 1138 Coils Coil 899 919 - -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 506 558 IPR001005 -
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 506 558 IPR017930 -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 744 803 - -
Cme06g02196 1138 SMART sant 410 507 IPR001005 -
Cme06g02196 1138 SMART sant 510 560 IPR001005 -
Cme06g02196 1138 SMART sant 563 612 IPR001005 -
Cme06g02196 1138 SMART sant 616 665 IPR001005 -
Cme06g02196 1138 SMART sant 668 716 IPR001005 -
Cme06g02196 1138 Gene3D - 508 559 - -
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 664 718 IPR017930 -
Cme06g02196 1138 SUPERFAMILY Homeodomain-like 487 555 IPR009057 -
Cme06g02196 1138 Gene3D - 563 613 - -
Cme06g02196 1138 Gene3D - 615 669 - -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 1003 1040 - -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 820 846 - -
Cme06g02196 1138 Gene3D - 671 716 - -
Cme06g02196 1138 SUPERFAMILY Homeodomain-like 614 710 IPR009057 -
Cme06g02196 1138 CDD SANT 566 610 IPR001005 -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 1003 1064 - -
Cme06g02196 1138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 559 614 IPR017930 -
Cme06g02196 1138 MobiDBLite consensus disorder prediction 179 198 - -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 664 714 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 564 608 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 617 663 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 670 713 IPR001005 -
Cme06g02196 1138 Pfam Myb-like DNA-binding domain 511 556 IPR001005 -
Cme06g02196 1138 CDD SANT 671 714 IPR001005 -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 559 610 IPR001005 -
Cme06g02196 1138 ProSiteProfiles Myb-like domain profile. 612 663 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02196 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1838.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02196 Cme-Chr6:28093865 Cme04g02621 Cme-Chr4:32085347 4.08E-14 dispersed
Cme06g02196 Cme-Chr6:28093865 Cme03g01729 Cme-Chr3:25877481 1.70E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g01495 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.4 0.0e+00 1208.0
Cme06g02196 . 294 746 MYB-Related Transcription Factor Family AT3G18100 57.5 1.5e-149 526.9
Cme06g02196 . 294 746 MYB-Related Transcription Factor Family AT3G18100 57.5 1.5e-149 526.9
Cme02g01495 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.4 0.0e+00 1208.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41534 PF00249 Myb_DNA-binding 7.70E-08 CL0123 Cme TF