Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02215 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTCGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTTACCACTGATGTCGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGGATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAATCTGCCACTCATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAGTTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 48.31 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28527361 28535296 + MELO3C016435.2.1 Cme06g02215 331364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02215 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cme06g02215 255 MobiDBLite consensus disorder prediction 183 200 - -
Cme06g02215 255 CDD PHD_AL_plant 202 251 IPR044104 -
Cme06g02215 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Cme06g02215 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cme06g02215 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cme06g02215 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cme06g02215 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cme06g02215 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
Cme06g02215 255 MobiDBLite consensus disorder prediction 163 182 - -
Cme06g02215 255 SMART PHD_3 201 249 IPR001965 -
Cme06g02215 255 MobiDBLite consensus disorder prediction 141 201 - -
Cme06g02215 255 MobiDBLite consensus disorder prediction 141 162 - -
Cme06g02215 255 Pfam PHD-finger 202 251 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01394 Cme-Chr3:23448842 Cme06g02215 Cme-Chr6:28527361 4.35E-114 dispersed
Cme04g02724 Cme-Chr4:32610893 Cme06g02215 Cme-Chr6:28527361 3.92E-83 dispersed
Cme06g02215 Cme-Chr6:28527361 Cme12g00413 Cme-Chr12:6088450 1.26E-23 dispersed
Cme06g02215 Cme-Chr6:28527361 Cme10g01083 Cme-Chr10:9532808 5.22E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41536 PF12165 Alfin 2.40E-68 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02215 - - csv:101212601 488.419