Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02215 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTCGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTTACCACTGATGTCGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGGATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAATCTGCCACTCATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAGTTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 48.31 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28527361 28535296 + MELO3C016435.2.1 Cme06g02215 331364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02215 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cme06g02215 255 MobiDBLite consensus disorder prediction 183 200 - -
Cme06g02215 255 CDD PHD_AL_plant 202 251 IPR044104 -
Cme06g02215 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Cme06g02215 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cme06g02215 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Cme06g02215 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cme06g02215 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cme06g02215 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
Cme06g02215 255 MobiDBLite consensus disorder prediction 163 182 - -
Cme06g02215 255 SMART PHD_3 201 249 IPR001965 -
Cme06g02215 255 MobiDBLite consensus disorder prediction 141 201 - -
Cme06g02215 255 MobiDBLite consensus disorder prediction 141 162 - -
Cme06g02215 255 Pfam PHD-finger 202 251 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02215 - - - csv:101212601 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01394 Cme-Chr3:23448842 Cme06g02215 Cme-Chr6:28527361 4.35E-114 dispersed
Cme04g02724 Cme-Chr4:32610893 Cme06g02215 Cme-Chr6:28527361 3.92E-83 dispersed
Cme06g02215 Cme-Chr6:28527361 Cme12g00413 Cme-Chr12:6088450 1.26E-23 dispersed
Cme06g02215 Cme-Chr6:28527361 Cme10g01083 Cme-Chr10:9532808 5.22E-109 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02215 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 1.9e-113 405.6
Cme03g01394 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.1e-96 349.0
Cme01g02823 . 10 251 Alfin-like Transcription Factor Family AT1G14510 66.5 4.1e-92 334.7
Cme10g01083 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 2.8e-77 285.4
Cme04g02724 . 8 232 Alfin-like Transcription Factor Family AT1G14510 58.3 8.5e-74 273.9
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.4e-108 388.7
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT5G26210 65.1 5.0e-98 354.4
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-94 340.5
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 9.5e-81 297.0
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT5G26210 56.5 1.6e-75 279.6
Cme03g01394 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 4.7e-101 364.4
Cme01g02823 . 1 253 Alfin-like Transcription Factor Family AT3G42790 63.8 1.7e-95 345.9
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.2e-90 328.9
Cme10g01083 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 2.4e-81 298.9
Cme04g02724 . 8 234 Alfin-like Transcription Factor Family AT3G42790 56.3 2.2e-74 275.8
Cme10g01083 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 2.3e-113 405.2
Cme04g02724 . 1 235 Alfin-like Transcription Factor Family AT5G05610 72.6 2.0e-101 365.5
Cme03g01394 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 1.9e-91 332.4
Cme01g02823 . 10 253 Alfin-like Transcription Factor Family AT5G05610 62.9 8.1e-90 327.0
Cme06g02215 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.1e-83 306.6
Cme10g01083 . 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 1.1e-96 349.7
Cme04g02724 . 43 235 Alfin-like Transcription Factor Family AT3G11200 74.3 7.1e-83 303.9
Cme03g01394 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 1.9e-75 279.3
Cme01g02823 . 44 253 Alfin-like Transcription Factor Family AT3G11200 64.8 5.4e-75 277.7
Cme06g02215 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.6e-69 258.8
Cme06g02215 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cme03g01394 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.3e-65 245.0
Cme01g02823 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 2.3e-63 239.2
Cme10g01083 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Cme04g02724 . 8 130 Alfin-like Transcription Factor Family AT2G02470 70.8 5.6e-49 191.4
Cme03g01394 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.4e-74 273.9
Cme01g02823 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.4e-68 255.4
Cme06g02215 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.6e-67 250.4
Cme10g01083 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Cme04g02724 . 7 152 Alfin-like Transcription Factor Family AT5G20510 59.9 7.9e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41536 PF12165 Alfin 2.40E-68 No_clan Cme TF