Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02224 ATGTATGTTGACTTAACTTTTGTTTCTCTTTGTCAGATCACCATTTTTTGTTCTTTCTTCTCTTTAATTGTTCTACTGTTTTCATATTGTTCTATAATTTTCCTGCAGAATGATAGTAACTGGAAGAAAAGTCGGACGTATAATGTCATGACCTTGTATCTTCAACCATTATTGCTATGGACTGGAGCCACACTTATTTGCAGAGCTTTAGATCCTGTAGTTTTACGTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCATTGTCCACTGTGCTGGCCTCTGCATATTGCCTGTGTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAATACTGAATCCAGTGACGCCAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCCGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTATTGGGCTTTTCAACCCAAAAATTGCTTACAGCTGGAGGTCTTGGGACCGTATTGTTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAACGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGTACTGTTGAGGTTTGTATGTTCCTGTTGAACATGTACCATAAGCTGTTGATGTCAAAAAAACACGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAATTTACCATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATCAGCCATTTGGACGTCAATAAAATCAACAACATTGTCGCAGACATGCGTAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATTCTGAAAATCAGGCACTTTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTATGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGGCACCACGGGGCTCGACTTGCCACGCCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAGTGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCAACTTTGAATCGCCGCATGCTAATGATTGAGCCTCCTTATAAAGTTCATGGAGAAGATAGAAAACAAAGCCATAGCAGGACATCACGCACAACTGGAGAACAAAATGGTAAGCCCATTGCACGGTCATCGGGTGACAGCAAAGCAGCTAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTAAAGACTGGAGGAGACGCTGATACAAAAAAGCATTCCAAAGTTTCAATGTCAGTCTCTGAAGACAAATCAAGCAATGAACTGAAACATAAACCATCATCAAAGTCTGCTGCAAGTACCTCTGATATGCCAACTTCTGATGCCAAACCAACTAAATCAGATGCTGATAATTCATTGGAAGATTCCAGTCCCAAGCAATCCGAAGACAGCTTTGGAAGTAACATGCAGAACTTCAAGCCTTCCCTTCCTGCTGTTTCCTCTCCGGAAGATGTTAAGAAACCTGGAGGAACTACTTCAGCAGCAGCTTCACAGCAAAGAATCGTAGGTGAGCAGACAACAGTTCCAAATCCATCAACAAAGAAGCCTGGCGTGGAAGAGAATATAATTCTTGGTGTTGCTTTGGATGGCCCTAAGAGAACACTTCCTATTGAGGACAATTTACCTACTGCCGCATCAGGAGCAAAAGATTTGGCTGTATTCAATGGAGCAACAATGGCAGATAAGAATACGAAATGTCAGTCTCCTTCATCTCCTACCACATCTTCTAGTGAACAGTGA 1914 41.22 MYVDLTFVSLCQITIFCSFFSLIVLLFSYCSIIFLQNDSNWKKSRTYNVMTLYLQPLLLWTGATLICRALDPVVLRTESSQVVKQRVLNFVRSLSTVLASAYCLCSMIQQAQKFFSENTESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKLLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEVCMFLLNMYHKLLMSKKHVGWWSPTIIRGEDREAVHIPNHQFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDSENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHGARLATPIRTMQKMHSDSDLESVPFSDSIFGHRGATLNRRMLMIEPPYKVHGEDRKQSHSRTSRTTGEQNGKPIARSSGDSKAAKETMSSDRKTEVKTGGDADTKKHSKVSMSVSEDKSSNELKHKPSSKSAASTSDMPTSDAKPTKSDADNSLEDSSPKQSEDSFGSNMQNFKPSLPAVSSPEDVKKPGGTTSAAASQQRIVGEQTTVPNPSTKKPGVEENIILGVALDGPKRTLPIEDNLPTAASGAKDLAVFNGATMADKNTKCQSPSSPTTSSSEQ 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28835312 28843058 - MELO3C016418.2.1 Cme06g02224 331373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02224 637 MobiDBLite consensus disorder prediction 405 419 - -
Cme06g02224 637 Pfam Mechanosensitive ion channel 238 360 IPR006685 GO:0016020|GO:0055085
Cme06g02224 637 Pfam Mechanosensitive ion channel 135 214 IPR006685 GO:0016020|GO:0055085
Cme06g02224 637 MobiDBLite consensus disorder prediction 549 572 - -
Cme06g02224 637 MobiDBLite consensus disorder prediction 442 482 - -
Cme06g02224 637 MobiDBLite consensus disorder prediction 405 575 - -
Cme06g02224 637 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 13 622 - -
Cme06g02224 637 MobiDBLite consensus disorder prediction 516 535 - -
Cme06g02224 637 Gene3D - 92 191 - -
Cme06g02224 637 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 13 622 IPR045042 -
Cme06g02224 637 MobiDBLite consensus disorder prediction 483 504 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02224 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101217250 1059.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01806 Cme-Chr3:26454858 Cme06g02224 Cme-Chr6:28835312 0 dispersed
Cme06g00164 Cme-Chr6:999292 Cme06g02224 Cme-Chr6:28835312 2.02E-13 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00164 . 129 520 Mechanosensitive Ion Channel Family AT4G00290 65.8 9.0e-152 533.9
Cme03g01806 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.4 7.2e-197 684.1
Cme06g02224 . 18 635 Mechanosensitive Ion Channel Family AT5G10490 55.3 2.2e-169 592.8
Cme03g01806 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.4 7.3e-197 684.1
Cme06g02224 . 37 417 Mechanosensitive Ion Channel Family AT1G58200 69.0 3.0e-150 529.3
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT1G53470 55.4 3.9e-259 891.3
Cme01g01219 . 84 951 Mechanosensitive Ion Channel Family AT1G53470 50.4 1.2e-236 816.6
Cme11g01254 . 43 927 Mechanosensitive Ion Channel Family AT3G14810 52.8 5.6e-247 850.9
Cme11g01254 . 43 918 Mechanosensitive Ion Channel Family AT1G78610 59.2 1.5e-279 959.1
Cme01g01219 . 52 951 Mechanosensitive Ion Channel Family AT1G78610 55.6 1.8e-272 935.6
Cme11g01254 . 217 927 Mechanosensitive Ion Channel Family AT2G17000 60.7 2.6e-236 815.5
Cme01g01219 . 266 939 Mechanosensitive Ion Channel Family AT2G17000 58.0 1.9e-218 756.1
Cme02g00283 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.4 2.8e-194 675.6
Cme07g00186 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.3 4.3e-187 651.7
Cme07g00187 . 81 730 Mechanosensitive Ion Channel Family AT5G12080 52.6 2.0e-176 616.3
Cme07g00182 . 68 703 Mechanosensitive Ion Channel Family AT5G12080 52.6 1.6e-173 606.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71