Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02224 ATGTATGTTGACTTAACTTTTGTTTCTCTTTGTCAGATCACCATTTTTTGTTCTTTCTTCTCTTTAATTGTTCTACTGTTTTCATATTGTTCTATAATTTTCCTGCAGAATGATAGTAACTGGAAGAAAAGTCGGACGTATAATGTCATGACCTTGTATCTTCAACCATTATTGCTATGGACTGGAGCCACACTTATTTGCAGAGCTTTAGATCCTGTAGTTTTACGTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCATTGTCCACTGTGCTGGCCTCTGCATATTGCCTGTGTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAATACTGAATCCAGTGACGCCAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCCGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTATTGGGCTTTTCAACCCAAAAATTGCTTACAGCTGGAGGTCTTGGGACCGTATTGTTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAACGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGTACTGTTGAGGTTTGTATGTTCCTGTTGAACATGTACCATAAGCTGTTGATGTCAAAAAAACACGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAATTTACCATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATCAGCCATTTGGACGTCAATAAAATCAACAACATTGTCGCAGACATGCGTAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATTCTGAAAATCAGGCACTTTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTATGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGGCACCACGGGGCTCGACTTGCCACGCCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAGTGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCAACTTTGAATCGCCGCATGCTAATGATTGAGCCTCCTTATAAAGTTCATGGAGAAGATAGAAAACAAAGCCATAGCAGGACATCACGCACAACTGGAGAACAAAATGGTAAGCCCATTGCACGGTCATCGGGTGACAGCAAAGCAGCTAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTAAAGACTGGAGGAGACGCTGATACAAAAAAGCATTCCAAAGTTTCAATGTCAGTCTCTGAAGACAAATCAAGCAATGAACTGAAACATAAACCATCATCAAAGTCTGCTGCAAGTACCTCTGATATGCCAACTTCTGATGCCAAACCAACTAAATCAGATGCTGATAATTCATTGGAAGATTCCAGTCCCAAGCAATCCGAAGACAGCTTTGGAAGTAACATGCAGAACTTCAAGCCTTCCCTTCCTGCTGTTTCCTCTCCGGAAGATGTTAAGAAACCTGGAGGAACTACTTCAGCAGCAGCTTCACAGCAAAGAATCGTAGGTGAGCAGACAACAGTTCCAAATCCATCAACAAAGAAGCCTGGCGTGGAAGAGAATATAATTCTTGGTGTTGCTTTGGATGGCCCTAAGAGAACACTTCCTATTGAGGACAATTTACCTACTGCCGCATCAGGAGCAAAAGATTTGGCTGTATTCAATGGAGCAACAATGGCAGATAAGAATACGAAATGTCAGTCTCCTTCATCTCCTACCACATCTTCTAGTGAACAGTGA 1914 41.22 MYVDLTFVSLCQITIFCSFFSLIVLLFSYCSIIFLQNDSNWKKSRTYNVMTLYLQPLLLWTGATLICRALDPVVLRTESSQVVKQRVLNFVRSLSTVLASAYCLCSMIQQAQKFFSENTESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKLLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEVCMFLLNMYHKLLMSKKHVGWWSPTIIRGEDREAVHIPNHQFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDSENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHGARLATPIRTMQKMHSDSDLESVPFSDSIFGHRGATLNRRMLMIEPPYKVHGEDRKQSHSRTSRTTGEQNGKPIARSSGDSKAAKETMSSDRKTEVKTGGDADTKKHSKVSMSVSEDKSSNELKHKPSSKSAASTSDMPTSDAKPTKSDADNSLEDSSPKQSEDSFGSNMQNFKPSLPAVSSPEDVKKPGGTTSAAASQQRIVGEQTTVPNPSTKKPGVEENIILGVALDGPKRTLPIEDNLPTAASGAKDLAVFNGATMADKNTKCQSPSSPTTSSSEQ 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28835312 28843058 - MELO3C016418.2.1 Cme06g02224 331373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02224 637 MobiDBLite consensus disorder prediction 405 419 - -
Cme06g02224 637 Pfam Mechanosensitive ion channel 238 360 IPR006685 GO:0016020|GO:0055085
Cme06g02224 637 Pfam Mechanosensitive ion channel 135 214 IPR006685 GO:0016020|GO:0055085
Cme06g02224 637 MobiDBLite consensus disorder prediction 549 572 - -
Cme06g02224 637 MobiDBLite consensus disorder prediction 442 482 - -
Cme06g02224 637 MobiDBLite consensus disorder prediction 405 575 - -
Cme06g02224 637 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 13 622 - -
Cme06g02224 637 MobiDBLite consensus disorder prediction 516 535 - -
Cme06g02224 637 Gene3D - 92 191 - -
Cme06g02224 637 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 13 622 IPR045042 -
Cme06g02224 637 MobiDBLite consensus disorder prediction 483 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01806 Cme-Chr3:26454858 Cme06g02224 Cme-Chr6:28835312 0 dispersed
Cme06g00164 Cme-Chr6:999292 Cme06g02224 Cme-Chr6:28835312 2.02E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02224 K22047 - csv:101217250 1059.67