Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02231 ATGTCTGCTTCTGACGCCGTCAACAACAACAATGCCGCCATAATTGAACATTCTCATCAACAACACACACATCGAATACACGGGAATAATCAATCTTCCAACAATGCCGCCACCCCTTTACCCCTCAAAAAACCCCCTTCTAAAGACCGCCACAGTAAGGTCGATGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGTGCTGCTCGTGTTTTCCAACTTACCCGCGAATTAGGCCACAAATCCGACGGTCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCCTCCATTATCGCCGCCACTGGTACCGGTACCACTCCGGCTAGCTTCTCCACTATCTCCGCTTCACTCCGAACTCCTCCTGCCGCTTCCGTTTCCGACCATAAACCCCTTTTGCCTCCCGCGCCTTTCATTTTGGGTAAACGCGTTAGAACCGACGACGATGTAGCTAATAAAGACGACACCGGTGGGGCTGGTGCTGGGATTTCGGTTGGTCCTTCTATTGGTTCGATTATGGGTCCGGCTGTCGCGGGTGGGTATTGGGCGATTCCGGCGAGGTCGGATTTTGGGCAGGTGTGGAGCTTCGCGGCGGCGGCAGCAGCGGCGGCGGCGCCGGAGATGGTGATTCAGCCGACGGCGGTTTCTCATCAAGCGTCGTTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCAGCGAAAGTGGGAAATTACCTTCCGGGGCATTTGAATTTGCTTGCCTCTTTATCAGGTGGACCGGGAAGTTCCGGACGAAGAGACAATGACCACCGTTGA 798 55.01 MSASDAVNNNNAAIIEHSHQQHTHRIHGNNQSSNNAATPLPLKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRTPPAASVSDHKPLLPPAPFILGKRVRTDDDVANKDDTGGAGAGISVGPSIGSIMGPAVAGGYWAIPARSDFGQVWSFAAAAAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29167155 29168260 + MELO3C025357.2.1 Cme06g02231 331380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02231 265 MobiDBLite consensus disorder prediction 44 60 - -
Cme06g02231 265 MobiDBLite consensus disorder prediction 18 60 - -
Cme06g02231 265 Pfam TCP family transcription factor 47 127 IPR017887 -
Cme06g02231 265 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 262 - -
Cme06g02231 265 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 262 IPR005333 GO:0003700
Cme06g02231 265 MobiDBLite consensus disorder prediction 25 40 - -
Cme06g02231 265 ProSiteProfiles TCP domain profile. 47 101 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02231 Cme-Chr6:29167155 Cme10g00786 Cme-Chr10:5105118 1.89E-94 dispersed
Cme11g01823 Cme-Chr11:26425626 Cme06g02231 Cme-Chr6:29167155 2.27E-27 dispersed
Cme06g02231 Cme-Chr6:29167155 Cme11g02537 Cme-Chr11:31804195 1.84E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41537 PF03634 TCP 1.50E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02231 K16221 - csv:101214586 467.618