Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02231 ATGTCTGCTTCTGACGCCGTCAACAACAACAATGCCGCCATAATTGAACATTCTCATCAACAACACACACATCGAATACACGGGAATAATCAATCTTCCAACAATGCCGCCACCCCTTTACCCCTCAAAAAACCCCCTTCTAAAGACCGCCACAGTAAGGTCGATGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGTGCTGCTCGTGTTTTCCAACTTACCCGCGAATTAGGCCACAAATCCGACGGTCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCCTCCATTATCGCCGCCACTGGTACCGGTACCACTCCGGCTAGCTTCTCCACTATCTCCGCTTCACTCCGAACTCCTCCTGCCGCTTCCGTTTCCGACCATAAACCCCTTTTGCCTCCCGCGCCTTTCATTTTGGGTAAACGCGTTAGAACCGACGACGATGTAGCTAATAAAGACGACACCGGTGGGGCTGGTGCTGGGATTTCGGTTGGTCCTTCTATTGGTTCGATTATGGGTCCGGCTGTCGCGGGTGGGTATTGGGCGATTCCGGCGAGGTCGGATTTTGGGCAGGTGTGGAGCTTCGCGGCGGCGGCAGCAGCGGCGGCGGCGCCGGAGATGGTGATTCAGCCGACGGCGGTTTCTCATCAAGCGTCGTTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCAGCGAAAGTGGGAAATTACCTTCCGGGGCATTTGAATTTGCTTGCCTCTTTATCAGGTGGACCGGGAAGTTCCGGACGAAGAGACAATGACCACCGTTGA 798 55.01 MSASDAVNNNNAAIIEHSHQQHTHRIHGNNQSSNNAATPLPLKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRTPPAASVSDHKPLLPPAPFILGKRVRTDDDVANKDDTGGAGAGISVGPSIGSIMGPAVAGGYWAIPARSDFGQVWSFAAAAAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29167155 29168260 + MELO3C025357.2.1 Cme06g02231 331380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02231 265 MobiDBLite consensus disorder prediction 44 60 - -
Cme06g02231 265 MobiDBLite consensus disorder prediction 18 60 - -
Cme06g02231 265 Pfam TCP family transcription factor 47 127 IPR017887 -
Cme06g02231 265 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 262 - -
Cme06g02231 265 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 262 IPR005333 GO:0003700
Cme06g02231 265 MobiDBLite consensus disorder prediction 25 40 - -
Cme06g02231 265 ProSiteProfiles TCP domain profile. 47 101 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02231 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101214586 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02231 Cme-Chr6:29167155 Cme10g00786 Cme-Chr10:5105118 1.89E-94 dispersed
Cme11g01823 Cme-Chr11:26425626 Cme06g02231 Cme-Chr6:29167155 2.27E-27 dispersed
Cme06g02231 Cme-Chr6:29167155 Cme11g02537 Cme-Chr11:31804195 1.84E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02231 . 45 265 TCP Transcription Factor Family AT5G23280 61.8 1.3e-63 240.0
Cme10g00786 . 93 315 TCP Transcription Factor Family AT5G23280 59.6 5.3e-60 228.0
Cme11g02537 . 65 328 TCP Transcription Factor Family AT2G45680 53.8 1.6e-65 246.9
Cme10g00425 . 71 165 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Cme12g02008 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Cme10g00701 . 46 165 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Cme10g00701 . 46 147 TCP Transcription Factor Family AT1G69690 78.8 2.8e-37 152.9
Cme06g01771 . 8 241 TCP Transcription Factor Family AT3G27010 58.2 2.8e-58 222.6
Cme11g02340 . 36 270 TCP Transcription Factor Family AT3G27010 52.0 3.5e-53 205.7
Cme10g00786 . 63 313 TCP Transcription Factor Family AT5G08330 55.4 9.9e-64 240.4
Cme06g02231 . 31 264 TCP Transcription Factor Family AT5G08330 59.1 1.3e-60 229.9
Cme02g01824 CCT 49 148 TCP Transcription Factor Family AT5G60970 76.2 2.0e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41537 PF03634 TCP 1.50E-31 No_clan Cme TF