Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02233 ATGGCAAATAACTTGGGACCTTTTTCTATCGTTTCATCTCTTCTCTTCCTCTCTTTGATCATCGGAACTAGTTTAGCGGCTCGTAATCTAAACGACAATGTGTTAGAATGGGTAAAGAAGGACCATCGCCATTTTCTTCGTGCAGTTATTCACGTATCAGATCTTGACCGTTCTATTCGGTTTTACACTAAAGGCTTTGGAATGAAAGTTTTAAAAAGAAGGAACTTTCCAGAACGTCAATATAGAGATGCCCTCGTTGGATTTGGACCCCAAAACACTCACTTTTTGTTAGAATTAAGACAAAGACATGATTCCAATAATGTATTTATTGGAACAGAGTTTGGACACTTTGGGATTGCCACTCAAGATGTTTATAAATCCGTGGAGAAAGCTAGAGCTAATGGTGCATTGGTGATCCAAAAACCCCAAAAAGTTAACCAAACCATGTTTGCCTTTGTGCAAGATCATGATGGCTATAAGTTTAAACTTATTCAAAGAATATCTTTTGCTGATCCTCTTGTTCAAGTTATGCTTCATGTAGAAGATTTGAATCGATCTCTCAACTTCTATACGAAGGCATTGGGCATGAAGTTGTTTGAAAAGCAAAACAATTCAACAGGACAGATTGTTTTAGGGACTTTGGGTTATGGAATAAACCAAAGTAAAACAACAACAGTGTTGCAATTGGAAAAGAGGAAAAATATCCCTCGTGATGATGGACGAGATGGTTATTCAATGGTGTATATTGGTACTGACAATGTAAACAAGAGTGCTGAAGCAGCTAAGCTGGTAATGAAAGAGCTTGGTGGTAACCTAATCATCGAGCCTGTTCTACTGTCTGATATCAACGTCAAACTAACTGGCTTTTCTGACCCAGATAATTGGATAACGATTATGGTTGACAATAAAGATTATCAAAGAGGAAGGCTATGA 933 37.62 MANNLGPFSIVSSLLFLSLIIGTSLAARNLNDNVLEWVKKDHRHFLRAVIHVSDLDRSIRFYTKGFGMKVLKRRNFPERQYRDALVGFGPQNTHFLLELRQRHDSNNVFIGTEFGHFGIATQDVYKSVEKARANGALVIQKPQKVNQTMFAFVQDHDGYKFKLIQRISFADPLVQVMLHVEDLNRSLNFYTKALGMKLFEKQNNSTGQIVLGTLGYGINQSKTTTVLQLEKRKNIPRDDGRDGYSMVYIGTDNVNKSAEAAKLVMKELGGNLIIEPVLLSDINVKLTGFSDPDNWITIMVDNKDYQRGRL 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29254878 29259065 + MELO3C025360.2.1 Cme06g02233 331382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02233 310 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 44 166 IPR037523 -
Cme06g02233 310 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 174 297 IPR029068 -
Cme06g02233 310 ProSitePatterns Glyoxalase I signature 1. 175 196 IPR018146 GO:0004462|GO:0046872
Cme06g02233 310 TIGRFAM glyox_I: lactoylglutathione lyase 33 173 IPR004361 GO:0004462|GO:0046872
Cme06g02233 310 PANTHER LACTOYLGLUTATHIONE LYASE 12 307 - -
Cme06g02233 310 PANTHER LACTOYLGLUTATHIONE LYASE 12 307 - -
Cme06g02233 310 Gene3D - 169 308 IPR029068 -
Cme06g02233 310 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 172 302 IPR037523 -
Cme06g02233 310 Gene3D - 19 166 IPR029068 -
Cme06g02233 310 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 175 213 IPR004360 -
Cme06g02233 310 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 48 162 IPR004360 -
Cme06g02233 310 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 46 168 IPR029068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02233 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - csv:101203268 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02233 Cme-Chr6:29254878 Cme12g01496 Cme-Chr12:22562970 8.16E-76 dispersed
Cme06g02233 Cme-Chr6:29254878 Cme08g00408 Cme-Chr8:2507543 4.80E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36