Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02249 ATGGTTGATCTAGACGTCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACAACTGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTGCAGGACAAAGAGTTGGGGAAGATAATCCAGCTCCAAGGCGATCAGCGCAAGAACGTCTCTCAGTTCCTTGTTCAGGCCGGGCTTGTCAAGAAGGATCAAATCAAGATACATGGTTTTTGA 339 46.61 MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29478909 29479570 - MELO3C025375.2.1 Cme06g02249 331398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02249 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Cme06g02249 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Cme06g02249 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Cme06g02249 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Cme06g02249 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Cme06g02249 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Cme06g02249 112 Gene3D - 2 112 - -
Cme06g02249 112 SUPERFAMILY eIF1-like 3 112 IPR036877 GO:0003743|GO:0006413
Cme06g02249 112 PANTHER BNAA10G09260D PROTEIN 1 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00414 Cme-Chr1:2919334 Cme06g02249 Cme-Chr6:29478909 2.14E-62 dispersed
Cme01g01033 Cme-Chr1:12741259 Cme06g02249 Cme-Chr6:29478909 7.99E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02249 K03113 - csv:101214921 229.18