Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02250 ATGATCCACTCTCTCGAACCCAAATTCCACCAAACCCCACTTCCCCTTCTCCGCCGCATCCCCAAATCTCCACACCCCATTTCAATCCGATGCGGCGGCGCCACCCGCGAGCTCCGATCTCGACTAGACTCCATCAAAAACACCCAGAAGCTCACCGAAGCCATGAAGCTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCATCACCCAACAAATCCAACGAGAAGACATCGATTTCCCCTTCCTAAATCCCAGACCCGTCAGAAAAGTCGCCGTCGTCGTCTTCACCGGCGACCGGGGCCTCTGCGGAGGCTTCAACGCTTCAGTATTAAAAAAAGCCGAGACCCGATTGGCGGAATTGAAAAACCTCAATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAACTCCTATTTCCGCCGCCGGTCCGATATTGAAGTCGATCGATTCATCACCGGCTGCAGCGGTGTTTCATTACCCACAGCAAAAGAAGCGCAAGCCATAGCTGACATTGTGTTTTCTCTGTTCATCAGCGAAGAAGTAGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCTGAGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGTGGGTTTAGATTGACGACGGCGGAGGGGAAATTGACGTTTGAACAAGACCCAGTTCAGATTTTAGATGGGATGATGGCTTTGTATTTGAACAGCCAGATTTTGAGAGCTTTGCAGGAATCAATGGCGAGTGAAGTTGCGGCGAGGATGAATGCGATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTACGAGTGCTTATAATCGAGAGAGACAGGCTAAAATTACTGGGGAGATTTTGGAAATTGTTGCTGGAGCTGAAGCTCTTAAGGAATTTTGA 999 49.75 MIHSLEPKFHQTPLPLLRRIPKSPHPISIRCGGATRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFITQQIQREDIDFPFLNPRPVRKVAVVVFTGDRGLCGGFNASVLKKAETRLAELKNLNLGHTLISVGKKGNSYFRRRSDIEVDRFITGCSGVSLPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSEPVIETLLPLLGEGEAMGDGGFRLTTAEGKLTFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMSNASENAMELKKSVTSAYNRERQAKITGEILEIVAGAEALKEF 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29483655 29484802 - MELO3C025376.2.1 Cme06g02250 331399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02250 332 ProSitePatterns ATP synthase gamma subunit signature. 315 328 IPR023632 -
Cme06g02250 332 Pfam ATP synthase 35 329 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 248 331 - -
Cme06g02250 332 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 8 251 - -
Cme06g02250 332 Hamap ATP synthase gamma chain [atpG]. 32 329 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 Gene3D - 101 228 - -
Cme06g02250 332 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 35 329 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 PRINTS ATP synthase gamma subunit signature 276 295 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 PRINTS ATP synthase gamma subunit signature 307 328 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 PANTHER ATP SYNTHASE GAMMA CHAIN 248 331 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 PANTHER ATP SYNTHASE GAMMA CHAIN 8 251 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 329 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 CDD F1-ATPase_gamma 35 326 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cme06g02250 332 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 100 - -
Cme06g02250 332 Gene3D ATP synthase, gamma subunit, helix hairpin domain 239 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02250 Cme-Chr6:29483655 Cme12g01491 Cme-Chr12:22531458 8.98E-145 dispersed
Cme06g02250 Cme-Chr6:29483655 Cme08g00402 Cme-Chr8:2482843 1.12E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02250 K02115 - csv:101214682 603.979