Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02256 ATGGCGGAGGAGAAGGGCAATGGAAGTGGACACCATATTATAATTCCGTGGATTCACCCCACAGAAAAACTAGAAGGTTCTTTAGAAACATTCCCAACTGGGGGTTTTCCCATAGAGAACATGGAGAATTTTGGAGCTGCTTCTTTGAGGAGTAGAAGGTTAGAGAGCTACATCAATACAAGTTCTGAACCAATTAAGAGAGAAGTCCCAAAATATTCTGTTGATGAACAGATACCAAAGAGTGAGAAGACTGATATATATGTGGATGATAATGGGTGGAGTTCAGTTTTGGTATCCTGTTTCAGAATTGTCTTTTGCTTTCTGACTATGATGGTTACTACTTTCGTTTGGGCTCTGATTATGCTTCTGCTCCTGCCATGGCCATACCAGAGGATTAGACAGGGCAATATATATGGCCATGTGACTGGTAGATTACTGATGTGGATCCTTGGAAATCCAATAAAGATTGAAGGTTCTGAGTTTTCAAATGAAAGGGCCATTTACATTTGCAATCATGCGTCACCTTTGGACATTTTTCTCATAATGTGGCTGACACCCACAGGTTCTGTTGGCATTGCAAAAAAGGAGATCATATGGTACCCTCTATTTGGACAACTGTACCTTCTCGCTAACCATCTTCGCATCGATCGTTCAAATCCAGTTGCAGCAGTTGAGTCCATGAAACAGGTAGCTCGAGCAGTTGCAAAAAATAACTTGTCCTTGATCATATTCCCTGAGGGTACTCGGTCTAAGGATGGAAGGTTGCTTCCTTTCAAAAAGGGCTTTGTCCATTTGGCATTGCAAACACAGCTGCCAATAGTTCCTATTGTCTTCACTGGCACTCATCGGGCATGGAGAAAGGGCAGCTTACGTGTACGACCAGCCCCTCTAACTGTGAAGTATCTTCCTCCAATACAAACCAACAATTGGACAGTGGAAAAGATCGACGAATACGTGAAAACAGTACACGAAACTTATGCCAAACACCTACCAGAGTCGCAAAGACCTCATCAGTAA 1017 42.67 MAEEKGNGSGHHIIIPWIHPTEKLEGSLETFPTGGFPIENMENFGAASLRSRRLESYINTSSEPIKREVPKYSVDEQIPKSEKTDIYVDDNGWSSVLVSCFRIVFCFLTMMVTTFVWALIMLLLLPWPYQRIRQGNIYGHVTGRLLMWILGNPIKIEGSEFSNERAIYICNHASPLDIFLIMWLTPTGSVGIAKKEIIWYPLFGQLYLLANHLRIDRSNPVAAVESMKQVARAVAKNNLSLIIFPEGTRSKDGRLLPFKKGFVHLALQTQLPIVPIVFTGTHRAWRKGSLRVRPAPLTVKYLPPIQTNNWTVEKIDEYVKTVHETYAKHLPESQRPHQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29567255 29571254 + MELO3C025383.2.1 Cme06g02256 331405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02256 338 SMART plsc_2 166 281 IPR002123 GO:0016746
Cme06g02256 338 TIGRFAM AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 163 278 IPR004552 GO:0003841|GO:0008654|GO:0016020
Cme06g02256 338 Pfam Acyltransferase 154 278 IPR002123 GO:0016746
Cme06g02256 338 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 62 335 - -
Cme06g02256 338 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA 62 335 - -
Cme06g02256 338 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 99 331 - -
Cme06g02256 338 CDD LPLAT_AGPAT-like 144 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02256 K13509 AGPAT1_2; lysophosphatidate acyltransferase [EC:2.3.1.51] - csv:101217317 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02256 Cme-Chr6:29567255 Cme08g01814 Cme-Chr8:21228969 8.67E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g506 . . . . Bpe09g00177 . Bma10g00546 Bma13g01055 . Cmo04g01027 . . . . . . . . . . . . . . Cla10g00508 Cam10g0503 Cec10g0520 Cco10g0507 Clacu10g0523 Cmu10g1349 Cre10g0754 . . Cone14ag1141 . . Csa03g00517 . Cme06g02256 Blo07g00907 Blo10g00829 Bda05g00723 Bda12g00906 . Bpe03g00793 . . . . . . . Car04g00894 . . Cpe01g00867 Bhi11g00622 . . . . Mch10g1268 . . . . . . . . Lsi05g00602 . Chy06g01813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009452 2 2 2 2 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 2 1 33