Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02261 ATGAACTTTCTCCATAATTGGGATAACTGCTGGATGAAAATTGTACCGGCAGGAAAAGCTTTTCTTTTTCCTCTAGGGAAGATACTGGGAAGCGGTTTTGAGGTAATTACTGTTGGCAAGAAAAAACTTGTTCGGTCAGTTCCGACTGAGTTAAACAAGGATCACAATGAAATTCTTGAGCTTGCGCAGGCTCAAGGCTATGTAACTGTTGATGAGGTAGAGAGACGACTTTCTTGGACATCTGGTCGTGCAGTTGATGCCCTTGATACTCTCCTAGATGAAGGTCTTGCGATGATTGATGACGGCCACCGTGATGGTAGACGTCGCTATTGGTTTCCTTGTGTTTCTCCTATCTCATCTTCTCTCACAACTGATGCCTAA 381 43.83 MNFLHNWDNCWMKIVPAGKAFLFPLGKILGSGFEVITVGKKKLVRSVPTELNKDHNEILELAQAQGYVTVDEVERRLSWTSGRAVDALDTLLDEGLAMIDDGHRDGRRRYWFPCVSPISSSLTTDA 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29619997 29622321 - MELO3C031910.2.1 Cme06g02261 331410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02261 126 SUPERFAMILY Winged helix DNA-binding domain 51 114 IPR036390 -
Cme06g02261 126 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 27 117 IPR016689 GO:0000814|GO:0071985
Cme06g02261 126 Pfam EAP30/Vps36 family 27 101 IPR040608 -
Cme06g02261 126 Gene3D - 48 126 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02261 K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22 - csv:101213237 201.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g489 . . . . . Bpe08g01130 . . . Cmo04g01021 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00523 . Cme06g02261 . . . . . . . . . . . Cma04g00951 . Car04g00889 . . . . . . . . . . . . . . . . . Lsi05g00608 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0028941 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2