Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02277 ATGTGGAGGGACGCTGGAGCTCCTGCTGATTCTTTCTATGAGGTTCGCCCTGAGTGCACCGATGTTCCCAAAACCCGTTTCAAGATCAGGGCTGGGAAAACCTTAAGTGTTAGAAAATGGCAGGCAGCATTTAATCCCGAAGGGCAACTTGACATATCAAAGACTTTAAATCGCATACATCGAGGGGGGATCCATCCTTCAATCAGAGGAGAAGTTTGGGAATTTCTTCTTGGTTGTTATGATCCTATGAGTACCTTTGAGGAAAGAGAAGCAATTCGCCAGCGTCGAAGGATTGAGTATGCCACTTGGAAGGAAGATTGTCGACAAATGTTTCCTGTCGTTGGAAGTGGTAGATACATCACAGCTCCTGTAATCACAGAGGATGGTCAGCCCATTCATGATCCGCTTGTACTCTTGGAAACAAATCCGGACAATGGTCCAGCTGTACCTCAAGATACTGGCCCCGCCGATGGCAATCCGGATGGTTCACGGTCAACTCCTAATAATAATTTGGAAACTGTGAAGGATCCGAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGGTCTTGATGTGGTTCGGACTGACAGAACATTGGTATTCTATGAAAAGCAAGAAAACTTATCAAAACTTTGGGATATTCTTGCTGTTTATGCCTGGATAGATAAAGACGTCGGTTACTGTCAAGGAATGAGTGATCTTTGTTCCCCCATGATAATGCTTCTTGAAGATGAAGGCGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTGCGAGGGAACTTCAGATGCACTGATAGCTCTGTAGGTGTGGAGACTCAACTAAATAATTTGGCTGCTATCACACAAGTCATTGATCCAAAGCTTCATCAGCACTTGGAGACACTTGGCGGTGGAGATTATCTTTTTGCTTTCAGGATGCTTATGGTTTTGTTCCGTCGAGAGTTTTCCTTTTGTGATTCCTTGTATCTCTGGGAGATGATGTGGGCCCTGGAATATGATCCTGATCTATGCACATTGTATGAAGAACCTGATTTGGGCAATGAGAAAGGAGAGGGATCAAAAGGAAAAGCAAAATCGATACGCCAATGTGGGAAATATGAGAGGGAGAACTTGAAAGCAAAGAACTCACAAGCTCCTCTTCCCATCTCTGTTTTCCTTGTTGCTAGTGTCTTGAAAGATAAGAGCACAAAGCTACTCACAGAAGCTCGAGGTCTAGACGATGTTGTGAAGATATTGAATGACATGACTGGAAACCTGGATGCCAAAAAAGCTTGCACTGGGGCAATGAAGCTTCACAAGAAATATCTAAAAAAGGCCAAGAAGGCATAG 1338 43.8 MWRDAGAPADSFYEVRPECTDVPKTRFKIRAGKTLSVRKWQAAFNPEGQLDISKTLNRIHRGGIHPSIRGEVWEFLLGCYDPMSTFEEREAIRQRRRIEYATWKEDCRQMFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPDNGPAVPQDTGPADGNPDGSRSTPNNNLETVKDPKIIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIMLLEDEGDAFWCFERLMRRLRGNFRCTDSSVGVETQLNNLAAITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLCTLYEEPDLGNEKGEGSKGKAKSIRQCGKYERENLKAKNSQAPLPISVFLVASVLKDKSTKLLTEARGLDDVVKILNDMTGNLDAKKACTGAMKLHKKYLKKAKKA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29965995 29971279 + MELO3C025406.2.1 Cme06g02277 331426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02277 445 Pfam Rab-GTPase-TBC domain 179 332 IPR000195 -
Cme06g02277 445 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 38 294 IPR035969 -
Cme06g02277 445 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 272 438 IPR035969 -
Cme06g02277 445 MobiDBLite consensus disorder prediction 140 172 - -
Cme06g02277 445 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 166 264 - -
Cme06g02277 445 PANTHER - 1 444 - -
Cme06g02277 445 MobiDBLite consensus disorder prediction 158 172 - -
Cme06g02277 445 SMART tbc_4 60 359 IPR000195 -
Cme06g02277 445 Gene3D - 270 445 - -
Cme06g02277 445 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 444 - -
Cme06g02277 445 ProSiteProfiles TBC/rab GAP domain profile. 63 334 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02277 - - - cmo:103501604 874.389
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01052 Cme06g02277 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01861 Cme-Chr1:26559449 Cme06g02277 Cme-Chr6:29965995 0 dispersed
Cme05g01873 Cme-Chr5:27489671 Cme06g02277 Cme-Chr6:29965995 2.55E-07 dispersed
Cme06g01172 Cme-Chr6:9121507 Cme06g02277 Cme-Chr6:29965995 3.53E-14 dispersed
Cme06g02277 Cme-Chr6:29965995 Cme07g01967 Cme-Chr7:24764788 4.02E-17 dispersed
Cme06g02277 Cme-Chr6:29965995 Cme09g02008 Cme-Chr9:23824839 2.02E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42