Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02317 ATGACCTTTGACATGGCTCAGAGTGCTAGGACAATCGGATCTTCCTTTAACTCCAGCAGTGGCAATGATGATACTCTCCTTCAAAGCTTTGCTGCTGCTCCAAATGGGGATGATTATGACAGTGATGGCTCCAATTTTGCACCCCCTACTCCTACAACCATATCCACAGCAATTCCTGCAGAACTTGCTGGTGTCATACCTTTGATTGATAGATTCCAGGTTGAAGGATTCTTAAGGATGATGCACAAACAAATCCATTCTTCTGGAAAGCGTGGATTCTTTTCCAAAAGATCTGTAGGTCCTCAAGTTCGAGAAAAATTCACATTTGAAGATATGTTATGTTTCCAAAAGGATCCTATACCAACTTCGTTGCTTAAAATTAACTCTGACCTGGTGAGCCGAGCCACAAAACTATTCCAAATAATCTTGAAGTACATGGGTGTTGACTCTTCTGATAGAGTCAATGCAACAAGCTTAGATGAACGAATTGAACTTGTTGGAAAACTGTACAAGCACACTTTGAAACGTTCAGAGCTACGAGATGAACTTTTTATCCAAATCTCTAAGCAAACCAGAAATTCTCCTGATAGGCAGTATTTAATCAAAGCATGGGAGCTGATGTATTTATGTGCATCTGCTATGCCTCCTAGCAAAGATATTGGTGGATATTTATCAGAGTATGTTCACAATGTTGCTCAAGGTGTAAGTACTGATCCGGAGGTTCGAGTTCTTGCATTAAATACACTGAATGCTTTAAAGCGTTGCATGAAGGCTGGTCCCAGGCATATAATACCTGGTCGTGAGGAAATTGAAGCTCTTTTGACAGGCCGAAAACTTACAACTATTGTCTTCTTTTTGGATGAAACTTTTGAAGAAATTACATATGATATGACAACAACGGTGGCTGATTCTGTTGAGGAACTTTCAGGTGTTATAAAACTGTCAGCACACTCTAGCTTCAGTCTTTTTGAATGCCGTAAGTTCGTTAGTGGAGCTAAAGCACTTGATCTAGGGAATGAGGAGTATGTTGGGCTTGATGATAATAAATATATTGGAGATCTGCTAGCAGAATTCAAGGCAACAAAAGATCGAAGCAAAGGAGAAATTCTGCACTTCAAGTTGACTTTTAAAAAGAAGCTGTTTCGGGAGTCTGATGAAGCTGTAGTGGACCCAATGTTTATACAACTATCATATGTTCAGCTGCAACATGACTATCTGTTGGGAAATTATCCTGTTGGAAGGGACGATGCTGCACAGCTTTCAGCATTACAAATCCTTGTTGAAATTGGATTTATTACCAGTCCAGAATCTTGCACTGATTGGAATTCGCTTCTAGAAAGATTTGTACCAAGACAAATTGCCATAACAAGACCAAAGCGAGAGTGGGAGTTGGATATTCTCTCGCGTTTTCGTTCAATGGAACATCTAACAAAGGATGATGCAAGACAACAGTTTCTTCGAATATTGAGAACACTTCCTTATGGGAATTCAGTTTTCTTTGGCGTCCGGAAGATTGATGATCCCATTGGACTTCTACCTGGACGAATCATTTTGGGTATCAACAAGAGAGGGGTTCATTTCTTCCGTCCAGTTCCAAAGGAGTATTTACATTCTGCTGAATTAAGAGATATAATGCAATTCGGTAGCAGTAACACTGCAGTCTTTTTTAAGATGAGAGTTGCTGGTGTCCTACACATTTTTCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGCATTGCTCTCCAGACACACATAAATGATGTCATGTTGCGTCGTTACTCTAAAGCTCGATCTGCTGCTGTTGGCTCCATGCTTGGAGACTCCTCCTGCAACTTAAAGACTCAAAGTGTGGAAGCATACGAGAAACGAGTTCAAGATTTGAGTAAGGGCATTGAAGAGTCTAAGAGAAATGCTGAACAATTGCTAAAGGAATTGCATGAAAAGAATAAGCAAGAAGTGGTAATGCAAGAAGAATTGGAAACTCTAAAAGAATCCTTGAGATTTGAAAAGCAAAACTTAGCTGAGGCAACACAGAGTCTTGAGAGGTTGAGATCGCAGTATGATGAAAAAGACAATGAACATCAGATCATGTTAATCGAAAGAAGGGGTTTGGAAGCAAAAATTGCAAAATTGAGCACTATGATGTTGGAAAATAACGGGAAAAAAGATACGGTTGGAATTGATGAACAGCTTCTACAAAAACTTCAAGATGAGTTGAGGCTTCGAAATGATGAGTTGCAAGCGTCTGAAGAAATTAGAAAGAAACTGGTAAATGAAAAGCTGTTCTTGGAACAAAGAATTTTTGGACTTGAGAAGAAGACTAGCAATGAGATGGAACATCTCCAGATAAGCTTTGAACATGAACGCAAAGTCTTGAAGCTGAAAGTGGCAGAACTTGAAAAAAAGCTTGAAGAAATAACTCAAGAACTAGCTGTCATGGAGTCAACTCTCACGACCAGGAACTCTGATTTGGCTGCCCTGCAAAATAATTTGAAGGAACTAGAGGAACTAAGAGAGATGAAAGAGGATATTGACCGAAAGAATGAGCAAACAGCCAACATTTTGAAGATGCAAGGGGCTCAGCTAGCTGAGATGGAAGCGCTTTATAAGGAAGAGCAAGTTCTGAGGAAACGCTATTTCAACATGATAGAAGATATGAAAGGAAAGATTAGAGTTTATTGTCGACTTCGACCTCTTAATGATAAAGAAATTATGGAAAAAGAGAAAAATGTGCTTACTAGTCTAGATGAGTTCACAGTTGAACATCTATGGAAGGATGATAAGCTGAAGCAACATATGTACGATCATGTATTTGATGGCACTGCCTCCCAGGAAGATGTTTTTGAAGATACACGGTATCTTGTCCAGTCTGCTGTAGATGGTTATAATGTATGCATCTTTGCTTATGGTCAAACTGGTTCTGGGAAGACATTTACAATATATGGATCTGAGGACCACCCTGGATTAACACCTCGTGCAATTGGAGAACTTTTTAGGATTTTGAAGAGGGATAGTAACAAGTTCTCATTTTCTTTGAAGGCTTACATGGTAGAATTATATCAAGATACGTTGGTAGATCTTCTTCTGCCAAGGAATGCAAAACGATTGAGATTAGAGATAAAAAAGGATGCAAAGGGAATGGTATCCATTGAAAACGTTACAATAGCTTCTATCTCAACATTTGAAGAATTGAAAAATATTATTTATAGAGGATTGGAGCAACGGCATACTTCGGAGACTCAAATGAATGAAGAAAGTTCAAGATCACATTTGATACTTTCAATTATTATTGAAAGTACCAACCTTCAGACACAATCTGTTTCTAAAGGGAAGCTTAGTTTTGTTGACCTTGCGGGATCAGAGAGAGTGAAGAAATCAGGCTCTTCTGGTAGCCAACTTAAGGAAGCTCAAAGCATAAATAAATCACTTTCGGCTCTTGGAGATGTCATCAGTGCTTTGTCTTCAGGGGGTCAACACATACCTTACAGAAACCATAAGCTCACTATGCTGATGAGTGATTCACTCGGTGGCAATGCCAAAACGCTTATGTTTGTCAATGTCTCTCCAGCCGAATCCAACCTGGATGAGACGTACAATTCACTCATGTATGCATCAAGAGTTCGATCAATTGTTAATGATCCAAGCAAAAATGTATCATCTAAGGAGGTTGCTCGACTGAAAAAAATGGTTGCTTATTGGAAAGAACAAGCAGGTAGGAGGGGAGAGGATGAGGAGTTGGAAGAAATTCAAAACGAGCGACATACTAAAGAAAAAGGAGACGTTAGATATTCCATGTAG 3798 39.28 MTFDMAQSARTIGSSFNSSSGNDDTLLQSFAAAPNGDDYDSDGSNFAPPTPTTISTAIPAELAGVIPLIDRFQVEGFLRMMHKQIHSSGKRGFFSKRSVGPQVREKFTFEDMLCFQKDPIPTSLLKINSDLVSRATKLFQIILKYMGVDSSDRVNATSLDERIELVGKLYKHTLKRSELRDELFIQISKQTRNSPDRQYLIKAWELMYLCASAMPPSKDIGGYLSEYVHNVAQGVSTDPEVRVLALNTLNALKRCMKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMTTTVADSVEELSGVIKLSAHSSFSLFECRKFVSGAKALDLGNEEYVGLDDNKYIGDLLAEFKATKDRSKGEILHFKLTFKKKLFRESDEAVVDPMFIQLSYVQLQHDYLLGNYPVGRDDAAQLSALQILVEIGFITSPESCTDWNSLLERFVPRQIAITRPKREWELDILSRFRSMEHLTKDDARQQFLRILRTLPYGNSVFFGVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICIALQTHINDVMLRRYSKARSAAVGSMLGDSSCNLKTQSVEAYEKRVQDLSKGIEESKRNAEQLLKELHEKNKQEVVMQEELETLKESLRFEKQNLAEATQSLERLRSQYDEKDNEHQIMLIERRGLEAKIAKLSTMMLENNGKKDTVGIDEQLLQKLQDELRLRNDELQASEEIRKKLVNEKLFLEQRIFGLEKKTSNEMEHLQISFEHERKVLKLKVAELEKKLEEITQELAVMESTLTTRNSDLAALQNNLKELEELREMKEDIDRKNEQTANILKMQGAQLAEMEALYKEEQVLRKRYFNMIEDMKGKIRVYCRLRPLNDKEIMEKEKNVLTSLDEFTVEHLWKDDKLKQHMYDHVFDGTASQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDHPGLTPRAIGELFRILKRDSNKFSFSLKAYMVELYQDTLVDLLLPRNAKRLRLEIKKDAKGMVSIENVTIASISTFEELKNIIYRGLEQRHTSETQMNEESSRSHLILSIIIESTNLQTQSVSKGKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLMYASRVRSIVNDPSKNVSSKEVARLKKMVAYWKEQAGRRGEDEELEEIQNERHTKEKGDVRYSM 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30572021 30596236 + MELO3C013702.2.1 Cme06g02317 331466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02317 1265 CDD KISc_C_terminal 887 1212 - -
Cme06g02317 1265 Pfam MyTH4 domain 168 272 IPR000857 GO:0005856
Cme06g02317 1265 SMART MyTH4_1 115 274 IPR000857 GO:0005856
Cme06g02317 1265 Pfam Kinesin motor domain 895 1210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme06g02317 1265 Gene3D Kinesin motor domain 832 1211 IPR036961 -
Cme06g02317 1265 SMART B41_5 275 499 IPR019749 -
Cme06g02317 1265 Gene3D - 391 492 IPR014352 -
Cme06g02317 1265 PANTHER KINESIN-LIKE PROTEIN 65 1241 - -
Cme06g02317 1265 ProSiteProfiles Kinesin motor domain profile. 889 1210 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme06g02317 1265 SUPERFAMILY PH domain-like 499 587 - -
Cme06g02317 1265 Gene3D MyTH4 domain 94 276 IPR038185 -
Cme06g02317 1265 Gene3D - 278 382 - -
Cme06g02317 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1238 IPR027417 -
Cme06g02317 1265 ProSitePatterns Kinesin motor domain signature. 1110 1121 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cme06g02317 1265 CDD FERM_C_KCBP 496 602 - -
Cme06g02317 1265 MobiDBLite consensus disorder prediction 1237 1265 - -
Cme06g02317 1265 PANTHER KINESIN-LIKE PROTEIN KLP-3 65 1241 - -
Cme06g02317 1265 Coils Coil 789 854 - -
Cme06g02317 1265 ProSiteProfiles FERM domain profile. 279 593 IPR000299 GO:0005856
Cme06g02317 1265 ProSiteProfiles MyTH4 domain profile. 115 274 IPR000857 GO:0005856
Cme06g02317 1265 SUPERFAMILY Second domain of FERM 377 494 IPR035963 -
Cme06g02317 1265 Gene3D - 497 604 IPR011993 -
Cme06g02317 1265 Gene3D - 1213 1261 - -
Cme06g02317 1265 PRINTS Kinesin heavy chain signature 961 982 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme06g02317 1265 PRINTS Kinesin heavy chain signature 1080 1097 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme06g02317 1265 PRINTS Kinesin heavy chain signature 1111 1129 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme06g02317 1265 PRINTS Kinesin heavy chain signature 1160 1181 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme06g02317 1265 SMART kinesin_4 887 1218 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme06g02317 1265 Pfam FERM central domain 386 499 IPR019748 -
Cme06g02317 1265 SUPERFAMILY Prismane protein-like 832 893 IPR011254 GO:0003824|GO:0016491
Cme06g02317 1265 Coils Coil 732 766 - -
Cme06g02317 1265 CDD FERM_B-lobe 394 492 IPR019748 -
Cme06g02317 1265 Coils Coil 617 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00160 Cme-Chr2:1202152 Cme06g02317 Cme-Chr6:30572021 4.09E-45 dispersed
Cme06g02317 Cme-Chr6:30572021 Cme07g02119 Cme-Chr7:25819278 6.11E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02317 - - csv:101206704 2349.7