Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02319 ATGAGTGACGCGAAGGAGAAACAGGAATTTGTACAAGATGTATCAGCTGTTTTAAGTGAAGGAAACCATGTTAATGCAAAAGAAGATGAGCTACATGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGTGAAAAAGAGATTGATTCGCCTGAAACTCGTGTACAGGAAATTGTACCTCTTGAAGATAATTTAGATAAACAGACAACTCTTCAGCAATCCAATCAAATTTCTGGGCATTCACTTCCCATGAATTATGACCAAGAGTTGGATAAGCCTGTTGCAGAACCTGCTTCTGATGTCAAGTCTGGCCCTATTGAGTTACCCCCAAGGGATCTAGATGCTGCTGTTTCCAGCTCTCCCCTAGAAACTGTTCAGTCCTCCATGGATGCGAAATCTGAGACCTTTGAGATGCCTGAAATTAAAACCTGTTCTCTCGATGATGCTTCAGCAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTAAAAGCTGAAACAGAAAATGCCATAGAATTGAAGGTCAATGAAGACATTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCGTTTATTTTGGATGAAAACCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCTTGGAATTCAAACCTCCTAAGTTCTATGGCGAGGGTCTGAATTGCCTCAAGTTGTGGAGGGCCGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGTCAAGTAGGAGAGTCTTTCAAGCCTCCAAAGACATGCACTACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGCGCTATGCAGGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATTAAGGACAAGAACTCACTCTCAATGCAGAAAAGGGAAAAACAACTAAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCACGCCATGAAATCAACACGTACAAAATCACCGAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGCGAGGAGGTCCGTGTTCAGTCTGATCCGGCAGGACGCTTGGTCATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1533 43.71 MSDAKEKQEFVQDVSAVLSEGNHVNAKEDELHDSLSVPAEATPNSCEKEIDSPETRVQEIVPLEDNLDKQTTLQQSNQISGHSLPMNYDQELDKPVAEPASDVKSGPIELPPRDLDAAVSSSPLETVQSSMDAKSETFEMPEIKTCSLDDASAASHDEPVTPHPVSSCVKAETENAIELKVNEDIVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30610995 30618991 + MELO3C013704.2.1 Cme06g02319 331468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02319 510 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677
Cme06g02319 510 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677
Cme06g02319 510 CDD ARID 221 303 - -
Cme06g02319 510 MobiDBLite consensus disorder prediction 1 134 - -
Cme06g02319 510 Gene3D - 405 510 IPR008978 -
Cme06g02319 510 Pfam Hsp20/alpha crystallin family 427 507 IPR002068 -
Cme06g02319 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 7 508 IPR045147 GO:0006357
Cme06g02319 510 SMART bright_3 217 308 IPR001606 GO:0003677
Cme06g02319 510 MobiDBLite consensus disorder prediction 314 337 - -
Cme06g02319 510 MobiDBLite consensus disorder prediction 65 85 - -
Cme06g02319 510 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 410 510 IPR002068 -
Cme06g02319 510 SUPERFAMILY HSP20-like chaperones 421 506 IPR008978 -
Cme06g02319 510 CDD ACD_sHsps-like 425 505 - -
Cme06g02319 510 Gene3D - 216 314 IPR036431 GO:0003677
Cme06g02319 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 7 508 - -
Cme06g02319 510 SUPERFAMILY ARID-like 210 317 IPR036431 GO:0003677
Cme06g02319 510 MobiDBLite consensus disorder prediction 314 331 - -
Cme06g02319 510 SMART ARID_2 213 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02319 - - - csv:116402528 957.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02319 Cme-Chr6:30610995 Cme07g00083 Cme-Chr7:521716 2.39E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00713 . 52 334 ARID Transcription Factor Family AT1G04880 56.0 8.5e-77 284.6
Cme06g02319 . 208 478 ARID Transcription Factor Family AT1G20910 61.4 1.8e-91 333.2
Cme07g00083 . 99 393 ARID Transcription Factor Family AT1G76110 68.2 1.9e-113 406.0
Cme06g02319 . 187 508 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cme04g01382 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.6 3.7e-266 914.4
Cme01g02766 CCT,ECH 87 810 ARID Transcription Factor Family AT3G43240 54.3 1.8e-233 805.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41540 PF00011 HSP20 8.40E-06 CL0190 Cme TR