Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02319 ATGAGTGACGCGAAGGAGAAACAGGAATTTGTACAAGATGTATCAGCTGTTTTAAGTGAAGGAAACCATGTTAATGCAAAAGAAGATGAGCTACATGATTCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGTGAAAAAGAGATTGATTCGCCTGAAACTCGTGTACAGGAAATTGTACCTCTTGAAGATAATTTAGATAAACAGACAACTCTTCAGCAATCCAATCAAATTTCTGGGCATTCACTTCCCATGAATTATGACCAAGAGTTGGATAAGCCTGTTGCAGAACCTGCTTCTGATGTCAAGTCTGGCCCTATTGAGTTACCCCCAAGGGATCTAGATGCTGCTGTTTCCAGCTCTCCCCTAGAAACTGTTCAGTCCTCCATGGATGCGAAATCTGAGACCTTTGAGATGCCTGAAATTAAAACCTGTTCTCTCGATGATGCTTCAGCAGCAAGTCACGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTGTAAAAGCTGAAACAGAAAATGCCATAGAATTGAAGGTCAATGAAGACATTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCGTTTATTTTGGATGAAAACCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCTTGGAATTCAAACCTCCTAAGTTCTATGGCGAGGGTCTGAATTGCCTCAAGTTGTGGAGGGCCGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGTCAAGTAGGAGAGTCTTTCAAGCCTCCAAAGACATGCACTACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGCGCTATGCAGGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGACCCTATTATTAAGGACAAGAACTCACTCTCAATGCAGAAAAGGGAAAAACAACTAAAAAGCATTGGTCTTCTTAAACGTAAGAAACCATCTTACATGGAGCACGCCATGAAATCAACACGTACAAAATCACCGAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGCGAGGAGGTCCGTGTTCAGTCTGATCCGGCAGGACGCTTGGTCATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1533 43.71 MSDAKEKQEFVQDVSAVLSEGNHVNAKEDELHDSLSVPAEATPNSCEKEIDSPETRVQEIVPLEDNLDKQTTLQQSNQISGHSLPMNYDQELDKPVAEPASDVKSGPIELPPRDLDAAVSSSPLETVQSSMDAKSETFEMPEIKTCSLDDASAASHDEPVTPHPVSSCVKAETENAIELKVNEDIVTTPHNGDSNMNHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKPSYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30610995 30618991 + MELO3C013704.2.1 Cme06g02319 331468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02319 510 Pfam ARID/BRIGHT DNA binding domain 219 303 IPR001606 GO:0003677
Cme06g02319 510 ProSiteProfiles ARID domain profile. 216 307 IPR001606 GO:0003677
Cme06g02319 510 CDD ARID 221 303 - -
Cme06g02319 510 MobiDBLite consensus disorder prediction 1 134 - -
Cme06g02319 510 Gene3D - 405 510 IPR008978 -
Cme06g02319 510 Pfam Hsp20/alpha crystallin family 427 507 IPR002068 -
Cme06g02319 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 7 508 IPR045147 GO:0006357
Cme06g02319 510 SMART bright_3 217 308 IPR001606 GO:0003677
Cme06g02319 510 MobiDBLite consensus disorder prediction 314 337 - -
Cme06g02319 510 MobiDBLite consensus disorder prediction 65 85 - -
Cme06g02319 510 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 410 510 IPR002068 -
Cme06g02319 510 SUPERFAMILY HSP20-like chaperones 421 506 IPR008978 -
Cme06g02319 510 CDD ACD_sHsps-like 425 505 - -
Cme06g02319 510 Gene3D - 216 314 IPR036431 GO:0003677
Cme06g02319 510 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 7 508 - -
Cme06g02319 510 SUPERFAMILY ARID-like 210 317 IPR036431 GO:0003677
Cme06g02319 510 MobiDBLite consensus disorder prediction 314 331 - -
Cme06g02319 510 SMART ARID_2 213 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02319 Cme-Chr6:30610995 Cme07g00083 Cme-Chr7:521716 2.39E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41540 PF00011 HSP20 8.40E-06 CL0190 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02319 - - csv:116402528 957.592