Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02320 ATGTCGTCGAAGCATTTTTCGGATTTGGATTCTTCAGCTTTGCCCAATCCGATCCCCACGGATGTTACTCCGGCTCCTTTCGATCATCTACCCTCCACCACCACCTCCTCCACCCTCTCTGAATCTGAAGAAATTCCCTGCACATCATCTTCACCGTCCTCCACTCCACCTCCGATTCACTTACCTCTCTCTTGGCCTCCCGATGCCACCCTTTCCCTCCAGTGGATACATCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCCACTTTCCTTCCGTCCTTCCCGTCTCTGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAAAATCCTCCAAGATTCACCCCCCAGCAGCGACTCCACTGTAGTCGTCGTCGGAGACATCCATGGTCAATTTCACGATCTCCTCTTTCTTCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGTTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCCTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGTGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAACTAAGTATGGAGACAGAGGTAAGCATGTCTATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTTTAGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGTGTATCAGTTCCTTCGTCTAAAAGATCGAAAGGAAAGAAAAATCGTAGGATAATCTTAAATCCGGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAGCTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCGGGTGATGTGTTGTGGTCTGATCCTTCTATGAATCCTGGTCTCTCCCCAAATAGAGAGAGGGGCATTGGCCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTCGATCTGAAGCTAATTATCAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGCAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCAGGGAAACTGATTACTTTGTTTAGTGCTCCAGACTATCCGCAATTTCAGGCCACTGAGGAAAGATACAAAAACAAAGGTGCATATATTGTTCTAGAACCTCCAAATTTTGATGTTCCAATCATTCATAGTTTTGAAGCCATTACTCCACGACCGAAGGTCAAAGCATATTATGATTTTGAGGATGTAATTGATTCTGACGAAGAATTAGACTTGGCTTCAATGGCAACTGAACCATGA 1398 45.78 MSSKHFSDLDSSALPNPIPTDVTPAPFDHLPSTTTSSTLSESEEIPCTSSSPSSTPPPIHLPLSWPPDATLSLQWIHHLIAAFDWSSKNLPPSHFPSVLPVSVFDTLILTASKILHKEPNCLKILQDSPPSSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDRGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSVSVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNRERGIGLLWGPDCTEEFLKKFDLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFEAITPRPKVKAYYDFEDVIDSDEELDLASMATEP 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30619231 30633140 - MELO3C013705.2.1 Cme06g02320 331469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02320 465 SMART pp2a_7 99 435 IPR006186 GO:0016787
Cme06g02320 465 MobiDBLite consensus disorder prediction 27 50 - -
Cme06g02320 465 Gene3D - 94 454 IPR029052 -
Cme06g02320 465 SUPERFAMILY Metallo-dependent phosphatases 95 436 IPR029052 -
Cme06g02320 465 Pfam Calcineurin-like phosphoesterase 135 363 IPR004843 GO:0016787
Cme06g02320 465 PRINTS Serine/threonine phosphatase family signature 135 162 IPR006186 GO:0016787
Cme06g02320 465 PRINTS Serine/threonine phosphatase family signature 165 192 IPR006186 GO:0016787
Cme06g02320 465 PRINTS Serine/threonine phosphatase family signature 198 222 IPR006186 GO:0016787
Cme06g02320 465 PRINTS Serine/threonine phosphatase family signature 235 261 IPR006186 GO:0016787
Cme06g02320 465 PRINTS Serine/threonine phosphatase family signature 295 322 IPR006186 GO:0016787
Cme06g02320 465 PRINTS Serine/threonine phosphatase family signature 389 405 IPR006186 GO:0016787
Cme06g02320 465 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 44 462 - -
Cme06g02320 465 MobiDBLite consensus disorder prediction 1 18 - -
Cme06g02320 465 ProSitePatterns Serine/threonine specific protein phosphatases signature. 199 204 IPR006186 GO:0016787
Cme06g02320 465 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 44 462 - -
Cme06g02320 465 MobiDBLite consensus disorder prediction 1 61 - -
Cme06g02320 465 CDD MPP_PP7 65 445 IPR041754 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02320 Cme-Chr6:30619231 Cme09g00518 Cme-Chr9:4983177 1.52E-140 dispersed
Cme06g02320 Cme-Chr6:30619231 Cme11g01538 Cme-Chr11:22852841 2.99E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02320 K04460 - csv:116402510 879.011