Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02323 ATGTCTCCCTATATCAGAGCTCTCACCGCGAATACTTCGTCGGCGCCTCCACCGGAAGCGGTGGCCTTGGAGTCGGACTTCGTGGTCATTCTGGCGGCTTTGCTCTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGCGCCTGGCTCCGCCGTGGGAATCAGGCGTCGGCGAATAGAGGACTGAAGAAGAAGATACTGCAGTCGCTCCCGAAATTCAGGTACAAGTCGACGGTGGGAGATGGGAAAATAGCGGCGGAATGTGCAATCTGCCTGGCGGAGTTCCTGGAGGGGGAGGAGATCCGACAGTTGCCGCAGTGCGGGCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTAGGTACCCACTCCTCCTGCCCTTCTTGCCGTCAGATTCTGGTAGTGGCCAGATGTCAGAAGTGCGGCCAGTTTCCGGCGGTTGTACAAGGCGGCGCTGCTGACAACAACGAGGAAGAGGAAGTGGAAGATAACAACAACGACAACAGGGGTTTGGGATTTTTGCCTTGA 537 57.17 MSPYIRALTANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGNQASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEVEDNNNDNRGLGFLP 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30645942 30646572 - MELO3C013708.2.1 Cme06g02323 331472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02323 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 137 IPR013083 -
Cme06g02323 178 Pfam Ring finger domain 90 133 IPR001841 -
Cme06g02323 178 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Cme06g02323 178 SUPERFAMILY RING/U-box 69 139 - -
Cme06g02323 178 MobiDBLite consensus disorder prediction 155 178 - -
Cme06g02323 178 SMART FANCL_C_2 87 141 - -
Cme06g02323 178 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 2 162 - -
Cme06g02323 178 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 162 - -
Cme06g02323 178 SMART ring_2 91 132 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02323 Cme-Chr6:30645942 Cme07g00036 Cme-Chr7:236448 2.16E-59 dispersed
Cme12g01701 Cme-Chr12:23884631 Cme06g02323 Cme-Chr6:30645942 1.84E-13 dispersed
Cme12g01705 Cme-Chr12:23905125 Cme06g02323 Cme-Chr6:30645942 6.35E-18 dispersed
Cme06g02323 Cme-Chr6:30645942 Cme03g01021 Cme-Chr3:19340610 5.18E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02323 - - csv:116402645 333.569