Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02340 ATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCACCACCACCACCACCACCACAACCCTCCTCTTTGTGACGATCATCTCCATCACCTCACTGGAACAACGGCCGCCGGGGCTCTCTACGTCAAAGTCATGACCGACGACCAATTGGAGACTCTTCGCAAACAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTTACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAACCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGAGGTGGACTCCGACACCTGTGCAGCTTCAGATCTTAGAGCGTATATTCGACCAAGGGAATGGGACTCCCAGCAAGCAAAAGATCAAAGAGATAACCGCTGAACTGGGGCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGAAAGCAGCAAAGTGCCCCACCTGCCTATGGCGAATCAGAAGTGGAGACAGAAGTTGAATCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTAATCAATCCTCTGCACCTTTAGGGGACGACATGTGCTTTCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCAAGAAGCTTCGGCCAGATGTCTTTTTATGAGGCTGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCAGAGAACTATAGTATCTACCAGCAAGCAGAAGGCTACAACATGACGGGACGACCATGA 858 47.44 MMEWEKPEQQNPYHHHHHHHHNPPLCDDHLHHLTGTTAAGALYVKVMTDDQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITAELGQHGQISESNVYNWFQNRRARSKRKQQSAPPAYGESEVETEVESPKDKKTKPVDFQTNQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFGQMSFYEAGNEQLTGKIETPENYSIYQQAEGYNMTGRP 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30764996 30768667 + MELO3C013727.2.1 Cme06g02340 331489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02340 285 MobiDBLite consensus disorder prediction 164 207 - -
Cme06g02340 285 ProSiteProfiles 'Homeobox' domain profile. 102 167 IPR001356 GO:0003677
Cme06g02340 285 CDD homeodomain 106 168 IPR001356 GO:0003677
Cme06g02340 285 Gene3D - 108 172 - -
Cme06g02340 285 Pfam Homeodomain 106 166 IPR001356 GO:0003677
Cme06g02340 285 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 282 IPR044559 GO:0003700
Cme06g02340 285 MobiDBLite consensus disorder prediction 1 23 - -
Cme06g02340 285 MobiDBLite consensus disorder prediction 181 195 - -
Cme06g02340 285 PANTHER - 2 282 - -
Cme06g02340 285 SUPERFAMILY Homeodomain-like 102 171 IPR009057 -
Cme06g02340 285 SMART HOX_1 104 171 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02340 - - - csv:101203410 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02340 Cme-Chr6:30764996 Cme07g00048 Cme-Chr7:304920 1.23E-76 dispersed
Cme06g02340 Cme-Chr6:30764996 Cme02g01686 Cme-Chr2:23977221 2.61E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme12g01833 CCT,ECH 1 194 Wox Gene Family AT3G18010 55.8 9.1e-50 194.5
Cme03g02065 . 5 163 Wox Gene Family AT1G46480 63.2 1.1e-49 193.4
Cme04g02188 . 4 255 Wox Gene Family AT3G03660 50.2 5.7e-53 204.9
Cme06g02340 . 35 283 Wox Gene Family AT4G35550 53.7 4.2e-71 265.0
Cme07g00048 . 1 126 Wox Gene Family AT4G35550 68.5 3.1e-42 169.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41543 PF00046 Homeodomain 9.60E-19 CL0123 Cme TF