Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme06g02340 | ATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCACCACCACCACCACCACCACAACCCTCCTCTTTGTGACGATCATCTCCATCACCTCACTGGAACAACGGCCGCCGGGGCTCTCTACGTCAAAGTCATGACCGACGACCAATTGGAGACTCTTCGCAAACAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTTACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAACCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGAGGTGGACTCCGACACCTGTGCAGCTTCAGATCTTAGAGCGTATATTCGACCAAGGGAATGGGACTCCCAGCAAGCAAAAGATCAAAGAGATAACCGCTGAACTGGGGCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGAAAGCAGCAAAGTGCCCCACCTGCCTATGGCGAATCAGAAGTGGAGACAGAAGTTGAATCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTAATCAATCCTCTGCACCTTTAGGGGACGACATGTGCTTTCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACGGCAAGAAGCTTCGGCCAGATGTCTTTTTATGAGGCTGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCAGAGAACTATAGTATCTACCAGCAAGCAGAAGGCTACAACATGACGGGACGACCATGA | 858 | 47.44 | MMEWEKPEQQNPYHHHHHHHHNPPLCDDHLHHLTGTTAAGALYVKVMTDDQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITAELGQHGQISESNVYNWFQNRRARSKRKQQSAPPAYGESEVETEVESPKDKKTKPVDFQTNQSSAPLGDDMCFQSPEMSSELHFLDPNTNKADTLFPSNGSLKTARSFGQMSFYEAGNEQLTGKIETPENYSIYQQAEGYNMTGRP | 285 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 30764996 | 30768667 | + | MELO3C013727.2.1 | Cme06g02340 | 331489 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme06g02340 | 285 | MobiDBLite | consensus disorder prediction | 164 | 207 | - | - | |
| Cme06g02340 | 285 | ProSiteProfiles | 'Homeobox' domain profile. | 102 | 167 | IPR001356 | GO:0003677 | |
| Cme06g02340 | 285 | CDD | homeodomain | 106 | 168 | IPR001356 | GO:0003677 | |
| Cme06g02340 | 285 | Gene3D | - | 108 | 172 | - | - | |
| Cme06g02340 | 285 | Pfam | Homeodomain | 106 | 166 | IPR001356 | GO:0003677 | |
| Cme06g02340 | 285 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 2 | 282 | IPR044559 | GO:0003700 | |
| Cme06g02340 | 285 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Cme06g02340 | 285 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
| Cme06g02340 | 285 | PANTHER | - | 2 | 282 | - | - | |
| Cme06g02340 | 285 | SUPERFAMILY | Homeodomain-like | 102 | 171 | IPR009057 | - | |
| Cme06g02340 | 285 | SMART | HOX_1 | 104 | 171 | IPR001356 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g02340 | Cme-Chr6:30764996 | Cme07g00048 | Cme-Chr7:304920 | 1.23E-76 | dispersed | |
| Cme06g02340 | Cme-Chr6:30764996 | Cme02g01686 | Cme-Chr2:23977221 | 2.61E-14 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41543 | PF00046 | Homeodomain | 9.60E-19 | CL0123 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme06g02340 | - | - | csv:101203410 | 558.525 |