Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02352 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTTCTCCTCTTCCCATGTCAACCCGAGGCATCATCGCCAGAAGCTTGAAGTTTACAACGAAGTTCTCCGACGAATCCAGCAATCCAATTTCCATGAAGCTAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTCAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTTACCCATAAGAGATTACTTCAATTGGCTGTGGATCCGTCTAACCGACCTGTATTTGAAATTCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAATTTTATCAATTCTTCTTGTTTGGATGCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCTTACACTTCAGGGCAGCAAGTACGGTGTTGAAGATAGGGACACTGCCCCAAATGCGACACCCAGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTGACTTCCTTACTTGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTTATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCCGAAAAGCAGCCCAGTCCTGCTTTGGGTAAGGATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGGAATACCTACTGATGGTACTGATGTCTGGGAAATAGACATCAGACAACTAAAATTTGAGAATAAAGTTGGATCTGGGTCATTTGGGGACCTGTATCGGGGCACATATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGTATTGTAACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTTTACTTAAAGTGGCCATCGATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCAAATCTTCTGATGGATGACAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAACATAAACCATATGATCATAAGGCTGACGTTTTCAGTTTTGGAGTAGCCTTATGGGAGCTTTTAACAGGAGAAATTCCCTACTCATCCATGACCCCACTACAAGCGGCAGTTGGCGTGGTCCAGAAGAGACTGCGGCCTACGATACCAAAGAATGTCCATCCTGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCACGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATATCTGAGCAGGTCGACAACAACGGGGAAAATCGACGCAAGAAGGATAAGTTATCCGGTGCATTATTCTCGGCCTTCAAGAAGAGGATCCACTGA 1740 43.05 MPIEDDVESCGSRATDFSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPSNRPVFEIRSVQVYPSANENFINSSCLDASMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEALTLQGSKYGVEDRDTAPNATPSFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPSPALGKDNQNRVESFPSCVGIPTDGTDVWEIDIRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAIDISRGMNYLHQNNIIHRDLKTANLLMDDNMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVALWELLTGEIPYSSMTPLQAAVGVVQKRLRPTIPKNVHPVLAELLERCWRHDPTERPNFSEILEILKQISEQVDNNGENRRKKDKLSGALFSAFKKRIH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30841256 30848360 - MELO3C013739.2.1 Cme06g02352 331501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02352 579 SUPERFAMILY Protein kinase-like (PK-like) 275 546 IPR011009 -
Cme06g02352 579 CDD STKc_MAP3K-like 303 546 - -
Cme06g02352 579 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 564 - -
Cme06g02352 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Cme06g02352 579 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Cme06g02352 579 CDD ACT_TyrKc 182 249 - -
Cme06g02352 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Cme06g02352 579 MobiDBLite consensus disorder prediction 1 25 - -
Cme06g02352 579 Gene3D Transferase(Phosphotransferase) domain 1 376 576 - -
Cme06g02352 579 SMART serkin_6 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02352 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672|GO:0006468
Cme06g02352 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672|GO:0006468
Cme06g02352 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672|GO:0006468
Cme06g02352 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672|GO:0006468
Cme06g02352 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672|GO:0006468
Cme06g02352 579 Coils Coil 234 254 - -
Cme06g02352 579 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 17 564 - -
Cme06g02352 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672|GO:0006468
Cme06g02352 579 SUPERFAMILY ACT-like 182 247 IPR045865 -
Cme06g02352 579 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02352 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01218 Cme-Chr1:15398386 Cme06g02352 Cme-Chr6:30841256 0 dispersed
Cme03g00342 Cme-Chr3:4558702 Cme06g02352 Cme-Chr6:30841256 3.53E-174 dispersed
Cme04g00435 Cme-Chr4:3440002 Cme06g02352 Cme-Chr6:30841256 4.87E-74 dispersed
Cme04g02435 Cme-Chr4:30989682 Cme06g02352 Cme-Chr6:30841256 3.12E-70 dispersed
Cme06g02352 Cme-Chr6:30841256 Cme08g00439 Cme-Chr8:2697311 4.29E-82 dispersed
Cme07g00188 Cme-Chr7:1277550 Cme06g02352 Cme-Chr6:30841256 7.63E-26 dispersed
Cme11g01424 Cme-Chr11:21102641 Cme06g02352 Cme-Chr6:30841256 1.02E-47 dispersed
Cme12g01699 Cme-Chr12:23877706 Cme06g02352 Cme-Chr6:30841256 1.13E-67 dispersed
Cme06g02352 Cme-Chr6:30841256 Cme08g00296 Cme-Chr8:1888947 9.40E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64977 PF07714 PK_Tyr_Ser-Thr 8.40E-75 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02352 - - csv:101220844 1140.95