Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme06g02358 | ATGGATTTCATAGCGAACCCATTTCGCTTTTCTTCATCTTCCTCCCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGTTGCTATGCGGTTTCTGCGATTCTTGGCAATATCTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTTGGGACTTTGCTTGGAGCCATGACCGGAGCATTGATTGGCCAAGAAACTGAAAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGACGAATCGGGGATTGGGTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGTCGTCTAGTTCGGGAGCGCATCGGTCCGGCCATATTGAGTGCAGTTCAAAGTCAGATGGGTGCTACAGAGACAAGCTTCGACGACATCCCAAACATCTTCGACACCAGCAGTGCAAAAGGATTGCCTGGGGATTCAGTCGAGAAAATCCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGCGAAAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCTTGCATTGATAAATGGCTTCTTACCCATGGCTCTTGCCCTTTATGCAGAAGAGATCTGTAA | 708 | 45.34 | MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 30878388 | 30881145 | + | MELO3C013744.2.1 | Cme06g02358 | 331507 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme06g02358 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
| Cme06g02358 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Cme06g02358 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 9 | 235 | - | - | |
| Cme06g02358 | 235 | CDD | RING-H2_PA-TM-RING | 189 | 232 | - | - | |
| Cme06g02358 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Cme06g02358 | 235 | Pfam | YMGG-like Gly-zipper | 49 | 85 | IPR027367 | - | |
| Cme06g02358 | 235 | SUPERFAMILY | RING/U-box | 176 | 235 | - | - | |
| Cme06g02358 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Cme06g02358 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 9 | 235 | IPR044523 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g02358 | Cme-Chr6:30878388 | Cme06g00350 | Cme-Chr6:2174320 | 3.27E-16 | dispersed | |
| Cme09g01316 | Cme-Chr9:18235751 | Cme06g02358 | Cme-Chr6:30878388 | 2.72E-11 | dispersed | |
| Cme06g02358 | Cme-Chr6:30878388 | Cme07g01560 | Cme-Chr7:21454876 | 7.11E-15 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme06g02358 | - | - | csv:101220376 | 460.685 |