Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02373 ATGGCAGAAGAGGATACCCCATCTGAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCACTTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGGAGAAGCACCGCCCCTCATAGCAGAAGAATTTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATACTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCTTTGGACAGTTTAGCATATGGCCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTTTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAAGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAATCAATGAAGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTTCAGGCATTCCATCGAGACCATAGAAGCAACAATACTTTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCGCATGATATCAATAGACTTTCGTCAGGTGAAGGGTGGTCAGAGCCATCCATACACGGCAATGTTTCTGCAAAATGGTTCCGGGAACCACTTGATCCTATTAGTGGTGAAAAGATCGGGAAAGCGAGGCAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCTTTGCCTGTTTCTGATGCTTCAAATGAAAGTATAGTTGCAGTGGTGGGCGTTACAACTTCACTTTATAGTGTAGGCCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAGGAGGGCTACTTGCTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTATGATGGCTGTTGATTCCCAGGACGATGTAATTCGATTAGGAGCCGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATCGGCAGTATTACATCGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGCGTTGTCATCATTCCTAGACAATACATAATGGGAAAAGTAGATGAGAGAGCTTACAAAACATTGGTCATACTTATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCTAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGAACACCAATGGCTGCTGTAATTGGATTGCTGGACATTCTAATGTGCGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGGGAACTTGAAGGACTTGTAGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACGACATGCCGAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCATATCATTCTTCGAGGGTGGTGTGAGACATCAAATACTCTTAAAGAAATGGGAAAATTTTGTATAGATCAGAAGAAGTCACGGTTTCCTAATCGGACAAAGATGAAACATCATGGAGACCACGCAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGTATCGATTCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCTTCCACAACCCGGACGCATGGTGGCACAGGTCTTGGACTATGCATTGTACGTACCCTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGCGATTTTATTTGGTTCTCAGCACGCCTGTAGACTCCACAGATCATCGCTGTCAAATTGATTTTGCAAAGCATAATGCAGTGGTTCTGCTTGCACTCCGTGGCAGCATGAGTCGATCAGTCACGTCACAGTGGCTTCGTAAAATTGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAAGAACTCTTTCAACCCAGGAGTAACGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAGGATATGAAAAGCCAAGTATTCATCATTGTTGCCGATATCGGGATTCTGGACTTGAGCACAGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGGAAAGCAAAATTTGCCTGGATGTTAAACCACGATACATCCAATGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTTTAATGAACAATAAGCCACTGTACAGATCAAAAATGATTCATATTTTAGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATGTATTTGAAATTGGGAATTCTAACTCTCAGTGTGCAATTCAAGTCAGAGATGGCCAAGAAGAAACGACAATGAAACCATGTCAGTCATCATTTCCACCCATTAACAATAGTTTGGTCGAGTTAACTCATGTACATTCAATAGAGAGTAATGTGAGGAGCAGCAATCAGTATGACGCAAGACAAAACTCATCAATGTCTCAATGTCAAAGTTCTGAATCCAACGGACAGAACTTAGAATCCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAATAACGTCCAAGGTAAGAAGTCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCAAGGTCATTGCTTTCGGAGACGGATTGCAAGCTGTTGAAGCTCTGACTGCCATGCTCAGCGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCCATTAGAAAGCTAGAAGTGGGAACAAGCCTTCACATTCCGATCGTAGCATTGACAGCCCATGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGTTTAGTGACCAAGAGCGTGCCAATTTGGAGAAGGAAATTGCACAAAATGATGCAAATTCTATGTTTGATGGCAGCACCAGATAG 3675 41.71 MAEEDTPSETSSSSSSSSSSSALTSPMSTPLRKVFCRISGLATSLRRSTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMKKYSKPVNQAEQVELYESMKDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESHDINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLMMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKHHGDHAKNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHRCQIDFAKHNAVVLLALRGSMSRSVTSQWLRKIGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHILMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVFEIGNSNSQCAIQVRDGQEETTMKPCQSSFPPINNSLVELTHVHSIESNVRSSNQYDARQNSSMSQCQSSESNGQNLESNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEFSDQERANLEKEIAQNDANSMFDGSTR 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30968481 30974702 - MELO3C013758.2.1 Cme06g02373 331522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02373 1224 PRINTS Bacterial sensor protein C-terminal signature 717 727 IPR004358 GO:0016310|GO:0016772
Cme06g02373 1224 PRINTS Bacterial sensor protein C-terminal signature 699 713 IPR004358 GO:0016310|GO:0016772
Cme06g02373 1224 PRINTS Bacterial sensor protein C-terminal signature 734 752 IPR004358 GO:0016310|GO:0016772
Cme06g02373 1224 ProSiteProfiles Histidine kinase domain profile. 516 774 IPR005467 -
Cme06g02373 1224 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 773 IPR003594 -
Cme06g02373 1224 MobiDBLite consensus disorder prediction 1038 1081 - -
Cme06g02373 1224 ProSiteProfiles Response regulatory domain profile. 1091 1223 IPR001789 GO:0000160
Cme06g02373 1224 SMART REC_2 1090 1210 IPR001789 GO:0000160
Cme06g02373 1224 Pfam His Kinase A (phospho-acceptor) domain 510 575 IPR003661 GO:0000155|GO:0007165
Cme06g02373 1224 SMART HisKA_10 509 575 IPR003661 GO:0000155|GO:0007165
Cme06g02373 1224 Gene3D - 577 775 IPR036890 -
Cme06g02373 1224 PANTHER OSMOSENSOR HISTIDINE KINASE 27 1199 - -
Cme06g02373 1224 Gene3D - 497 576 - -
Cme06g02373 1224 MobiDBLite consensus disorder prediction 1 26 - -
Cme06g02373 1224 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1199 - -
Cme06g02373 1224 CDD HisKA 510 571 IPR003661 GO:0000155|GO:0007165
Cme06g02373 1224 SMART HKATPase_4 622 774 IPR003594 -
Cme06g02373 1224 Coils Coil 1196 1216 - -
Cme06g02373 1224 Gene3D - 1068 1209 - -
Cme06g02373 1224 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 564 770 IPR036890 -
Cme06g02373 1224 CDD REC_hyHK_CKI1_RcsC-like 1092 1197 - -
Cme06g02373 1224 Pfam Response regulator receiver domain 1092 1198 IPR001789 GO:0000160
Cme06g02373 1224 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 497 576 IPR036097 GO:0000155|GO:0007165
Cme06g02373 1224 SUPERFAMILY CheY-like 1088 1197 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02373 - - - cmo:103490686 2321.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01547 Cme-Chr5:24812679 Cme06g02373 Cme-Chr6:30968481 3.53E-49 dispersed
Cme06g02373 Cme-Chr6:30968481 Cme10g01141 Cme-Chr10:10840410 2.79E-09 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g02373 . 31 1197 Histidine Kinase Gene Family AT2G17820 64.7 0.0e+00 1417.5
Cme09g01302 CCT 24 987 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1333.2
Cme10g01141 . 20 1022 Histidine Kinase Gene Family AT2G01830 65.4 0.0e+00 1279.2
Cme11g00934 . 305 1259 Histidine Kinase Gene Family AT2G01830 52.4 1.4e-271 932.9
Cme11g02319 . 8 846 Histidine Kinase Gene Family AT2G01830 54.1 9.8e-249 857.1
Cme07g00153 . 1 985 Histidine Kinase Gene Family AT5G10720 57.8 5.9e-290 993.8
Cme03g01314 . 46 1165 Histidine Kinase Gene Family AT1G09570 79.9 0.0e+00 1830.8
Cme03g01317 . 3 1148 Histidine Kinase Gene Family AT1G09570 71.2 0.0e+00 1633.6
Cme01g00552 . 18 1083 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1183.7
Cme06g00790 . 34 1103 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1181.4
Cme06g00790 . 13 1062 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1671.0
Cme12g01234 . 38 1098 Histidine Kinase Gene Family AT2G18790 56.6 0.0e+00 1201.8
Cme03g01314 . 66 1099 Histidine Kinase Gene Family AT2G18790 52.9 0.0e+00 1080.5
Cme03g01317 . 22 1051 Histidine Kinase Gene Family AT2G18790 52.0 7.4e-311 1063.5
Cme01g00552 . 26 1040 Histidine Kinase Gene Family AT2G18790 51.8 2.2e-307 1052.0
Cme01g00552 . 18 1087 Histidine Kinase Gene Family AT5G35840 61.0 0.0e+00 1333.2
Cme06g00790 . 21 1112 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1138.3
Cme03g01314 . 54 1159 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1114.8
Cme06g00790 . 3 1102 Histidine Kinase Gene Family AT4G16250 76.1 0.0e+00 1685.6
Cme12g01234 . 38 1160 Histidine Kinase Gene Family AT4G16250 55.3 0.0e+00 1246.1
Cme03g01314 . 53 1160 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1132.1
Cme01g00552 . 26 1086 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1092.4
Cme12g01234 . 15 1161 Histidine Kinase Gene Family AT4G18130 60.3 0.0e+00 1354.0
Cme06g00790 . 38 1115 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1253.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41545 PF02518 HATPase_c 1.40E-22 CL0025 Cme TR