Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02373 ATGGCAGAAGAGGATACCCCATCTGAAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCACTTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGGAGAAGCACCGCCCCTCATAGCAGAAGAATTTTTCATAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATACTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCTTTGGACAGTTTAGCATATGGCCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTTTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAAGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAATCAATGAAGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTTCAGGCATTCCATCGAGACCATAGAAGCAACAATACTTTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCGCATGATATCAATAGACTTTCGTCAGGTGAAGGGTGGTCAGAGCCATCCATACACGGCAATGTTTCTGCAAAATGGTTCCGGGAACCACTTGATCCTATTAGTGGTGAAAAGATCGGGAAAGCGAGGCAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCTTTGCCTGTTTCTGATGCTTCAAATGAAAGTATAGTTGCAGTGGTGGGCGTTACAACTTCACTTTATAGTGTAGGCCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAGGAGGGCTACTTGCTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTATGATGGCTGTTGATTCCCAGGACGATGTAATTCGATTAGGAGCCGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATCGGCAGTATTACATCGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGCGTTGTCATCATTCCTAGACAATACATAATGGGAAAAGTAGATGAGAGAGCTTACAAAACATTGGTCATACTTATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCTAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGAACACCAATGGCTGCTGTAATTGGATTGCTGGACATTCTAATGTGCGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGGGAACTTGAAGGACTTGTAGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACGACATGCCGAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCATATCATTCTTCGAGGGTGGTGTGAGACATCAAATACTCTTAAAGAAATGGGAAAATTTTGTATAGATCAGAAGAAGTCACGGTTTCCTAATCGGACAAAGATGAAACATCATGGAGACCACGCAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGTATCGATTCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCTTCCACAACCCGGACGCATGGTGGCACAGGTCTTGGACTATGCATTGTACGTACCCTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGCGATTTTATTTGGTTCTCAGCACGCCTGTAGACTCCACAGATCATCGCTGTCAAATTGATTTTGCAAAGCATAATGCAGTGGTTCTGCTTGCACTCCGTGGCAGCATGAGTCGATCAGTCACGTCACAGTGGCTTCGTAAAATTGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAAGAACTCTTTCAACCCAGGAGTAACGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAGGATATGAAAAGCCAAGTATTCATCATTGTTGCCGATATCGGGATTCTGGACTTGAGCACAGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGGAAAGCAAAATTTGCCTGGATGTTAAACCACGATACATCCAATGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTTTAATGAACAATAAGCCACTGTACAGATCAAAAATGATTCATATTTTAGAAGCTGTTATGAAGGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATGTATTTGAAATTGGGAATTCTAACTCTCAGTGTGCAATTCAAGTCAGAGATGGCCAAGAAGAAACGACAATGAAACCATGTCAGTCATCATTTCCACCCATTAACAATAGTTTGGTCGAGTTAACTCATGTACATTCAATAGAGAGTAATGTGAGGAGCAGCAATCAGTATGACGCAAGACAAAACTCATCAATGTCTCAATGTCAAAGTTCTGAATCCAACGGACAGAACTTAGAATCCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAATAACGTCCAAGGTAAGAAGTCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCAAGGTCATTGCTTTCGGAGACGGATTGCAAGCTGTTGAAGCTCTGACTGCCATGCTCAGCGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCCATTAGAAAGCTAGAAGTGGGAACAAGCCTTCACATTCCGATCGTAGCATTGACAGCCCATGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGTTTAGTGACCAAGAGCGTGCCAATTTGGAGAAGGAAATTGCACAAAATGATGCAAATTCTATGTTTGATGGCAGCACCAGATAG 3675 41.71 MAEEDTPSETSSSSSSSSSSSALTSPMSTPLRKVFCRISGLATSLRRSTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMKKYSKPVNQAEQVELYESMKDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESHDINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLMMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKHHGDHAKNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHRCQIDFAKHNAVVLLALRGSMSRSVTSQWLRKIGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHILMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVFEIGNSNSQCAIQVRDGQEETTMKPCQSSFPPINNSLVELTHVHSIESNVRSSNQYDARQNSSMSQCQSSESNGQNLESNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEFSDQERANLEKEIAQNDANSMFDGSTR 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30968481 30974702 - MELO3C013758.2.1 Cme06g02373 331522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02373 1224 PRINTS Bacterial sensor protein C-terminal signature 717 727 IPR004358 GO:0016310|GO:0016772
Cme06g02373 1224 PRINTS Bacterial sensor protein C-terminal signature 699 713 IPR004358 GO:0016310|GO:0016772
Cme06g02373 1224 PRINTS Bacterial sensor protein C-terminal signature 734 752 IPR004358 GO:0016310|GO:0016772
Cme06g02373 1224 ProSiteProfiles Histidine kinase domain profile. 516 774 IPR005467 -
Cme06g02373 1224 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 622 773 IPR003594 -
Cme06g02373 1224 MobiDBLite consensus disorder prediction 1038 1081 - -
Cme06g02373 1224 ProSiteProfiles Response regulatory domain profile. 1091 1223 IPR001789 GO:0000160
Cme06g02373 1224 SMART REC_2 1090 1210 IPR001789 GO:0000160
Cme06g02373 1224 Pfam His Kinase A (phospho-acceptor) domain 510 575 IPR003661 GO:0000155|GO:0007165
Cme06g02373 1224 SMART HisKA_10 509 575 IPR003661 GO:0000155|GO:0007165
Cme06g02373 1224 Gene3D - 577 775 IPR036890 -
Cme06g02373 1224 PANTHER OSMOSENSOR HISTIDINE KINASE 27 1199 - -
Cme06g02373 1224 Gene3D - 497 576 - -
Cme06g02373 1224 MobiDBLite consensus disorder prediction 1 26 - -
Cme06g02373 1224 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1199 - -
Cme06g02373 1224 CDD HisKA 510 571 IPR003661 GO:0000155|GO:0007165
Cme06g02373 1224 SMART HKATPase_4 622 774 IPR003594 -
Cme06g02373 1224 Coils Coil 1196 1216 - -
Cme06g02373 1224 Gene3D - 1068 1209 - -
Cme06g02373 1224 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 564 770 IPR036890 -
Cme06g02373 1224 CDD REC_hyHK_CKI1_RcsC-like 1092 1197 - -
Cme06g02373 1224 Pfam Response regulator receiver domain 1092 1198 IPR001789 GO:0000160
Cme06g02373 1224 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 497 576 IPR036097 GO:0000155|GO:0007165
Cme06g02373 1224 SUPERFAMILY CheY-like 1088 1197 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01547 Cme-Chr5:24812679 Cme06g02373 Cme-Chr6:30968481 3.53E-49 dispersed
Cme06g02373 Cme-Chr6:30968481 Cme10g01141 Cme-Chr10:10840410 2.79E-09 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41545 PF02518 HATPase_c 1.40E-22 CL0025 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02373 - - cmo:103490686 2321.2