Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02379 ATGTGCCCTTCCCCACATGCTCTCAATCATATCTATTTCTTTCCCTATAAAATCCATTTCTTCCCTTTTCTTCTAACTTCCTCTAACTTACAAAAACCTCTCTTCTCTACTCTAATGGCTTCCATTTCTTCTTCCCTTCTTTCTCTCCTCCTCCTTCTCTTCCCTTTCATTTCAGGTGTAGTAAATTCGTCAACTTTCACCATTTTAAATCAATGTGATTACACGGTGTGGCCAGGAGTTTTGTCCGGCGCTGGCACTTCACAGCTCTCCACCACCGGCTTCGTTCTTGAGAAAGGTCAGTCCAACGCTATCACCATGCCGCCGGGATGGTCCGGCCGCATTTGGGGCCGCACTTATTGCTCCCAAGATGCCACCGGTAGGTTCTCCTGTGCCACTGCCGACTGCGGCTCCGGCATCGTCGAGTGCAACGGTGCTGGCGCTACCCCGCCCGCCACCCTTGCGGAGTTCACGCTCAACGGTGCGGGCGGACTCGATTTCTACGATGTCAGCCTTGTAGATGGGTACAATGTGCCCATGTTAATCACACCACAAGACGGAACAGGTGGGGGAAACTGCACAACAATTGGATGTGCAACAGATTTAAACAGCGAATGTCCGGCGGAACTAAGAGTGGTGTTGAGCGACGGAGGTGAAAGAAGCGTAGCATGTAAAAGCGCATGTGAGGCTTTTGGTGATGCACAATATTGTTGTAGCGGTGAATATGGGAATCCAAACACTTGTAGACCATCATCTTATTCAGAGTTGTTCAAATCCGCATGTCCACAAGCTTATAGTTATGCGTACGACGACGGTAGCAGCACATTCACTTGCACCGCTGCCAATTACCTCATCACCTTTTGTCCATCTCTTTCAACAAGGTAG 882 49.32 MCPSPHALNHIYFFPYKIHFFPFLLTSSNLQKPLFSTLMASISSSLLSLLLLLFPFISGVVNSSTFTILNQCDYTVWPGVLSGAGTSQLSTTGFVLEKGQSNAITMPPGWSGRIWGRTYCSQDATGRFSCATADCGSGIVECNGAGATPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQDGTGGGNCTTIGCATDLNSECPAELRVVLSDGGERSVACKSACEAFGDAQYCCSGEYGNPNTCRPSSYSELFKSACPQAYSYAYDDGSSTFTCTAANYLITFCPSLSTR 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31006858 31008339 - MELO3C013763.2.1 Cme06g02379 331528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02379 293 PRINTS Pathogenesis-related protein signature 278 287 IPR001938 -
Cme06g02379 293 PRINTS Pathogenesis-related protein signature 165 181 IPR001938 -
Cme06g02379 293 PRINTS Pathogenesis-related protein signature 113 124 IPR001938 -
Cme06g02379 293 PRINTS Pathogenesis-related protein signature 65 77 IPR001938 -
Cme06g02379 293 CDD TLP-PA 65 287 - -
Cme06g02379 293 ProSiteProfiles Thaumatin family profile. 63 288 IPR001938 -
Cme06g02379 293 ProSitePatterns Thaumatin family signature. 126 142 IPR017949 -
Cme06g02379 293 PANTHER OS03G0233200 PROTEIN 45 291 IPR001938 -
Cme06g02379 293 PANTHER OS09G0536300 PROTEIN 45 291 - -
Cme06g02379 293 SUPERFAMILY Osmotin, thaumatin-like protein 65 289 IPR037176 -
Cme06g02379 293 SMART tha2 66 288 IPR001938 -
Cme06g02379 293 PIRSF PR5 24 293 IPR001938 -
Cme06g02379 293 Pfam Thaumatin family 70 288 IPR001938 -
Cme06g02379 293 Gene3D Thaumatin 64 288 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02379 Cme-Chr6:31006858 Cme06g02404 Cme-Chr6:31214573 6.52E-158 dispersed
Cme06g02378 Cme-Chr6:30996366 Cme06g02379 Cme-Chr6:31006858 4.15E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02379 - - cmo:103490689 576.244