Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02383 ATGCCTTCTTCTCTCCCACATCATCCCACCATTCTGGCGCCGGAATTCCTCCGCCACCCGGACGACCGTCCAAAGGTCCCTTACGACCAATTCAGCGACGAAATTCCCATCATCTCCCTTGCCGGAATTGACGTCGACGGCGAACGCAGGGCCGTCATTCGCCGGAGCATCGTTGAAGCTTGCGAGGAATGGGGGATCTTCCAGGTGGTGGACCATGGCGTCGACTCGGAGATTGTTTCCGATATGACTCGTCTGGCGGGACATTTCTTTGCTCTTCCGACGGAGGAGAAACTCCGTTTTGATATGTCCGGCGGTAAAAAGGGGGGATTCAACATCTCTAGTCATCTCCAGGGAGAAGTTGTAAAAGATTGGCGTGAGTTAGTAACATTCTTCTCATACCCAATTGAGAAAAGAGACTACTCTTTGTGGCCGAACAAGCCAGAGGGGTGGGCGGCGAAGACGGCGGAGTACAGCGAGAAGCTGATGGGGTTGGCTTGTAAGCTTTTGGAGGTTTTATCGGAAGCCATGGGTTTGGAGAAGGGGGCCTTGAGAAAGACTTGTGTGGACTTGGATCAAAAGATCGTTGTCAACTTCTATCCCAAATGCCCTGAGCCAGACTTCACCTTGGGGCTAAAGCGCCACACTGATCCTGGAACCATAACCTTGTTGTTACAAGACCAAGTCGGCGGCCTTCAGGCTACCAAGGATGGTGGTCGGACGTGGATCACTGTCCAACCTGTCCAAGGTGCTTTTGTCGTCAACTTAGGTGATCATGGTCATTATGTAAGCAATGGGAGGTTCAAGAGTGGTGATCACCAAGCAGTAGTGAACTCAAAGTCGAGCAGGATGTCAATAGCCACATTTCAGTACCCTTCACAAGAATCGATTGTGTATCCATTGAAGATTAGAGATGGGGAGAAACCAATTCTAGAAAAACCCATCACTTTCTCTGAGATGTATCACATGAAGATGAAGAATGATATCGAGTCTGCAAGGCTTAAGAAGCAAGCCCAACAACAAGCTCAAGACTTTGTTGCTTAA 1041 49.66 MPSSLPHHPTILAPEFLRHPDDRPKVPYDQFSDEIPIISLAGIDVDGERRAVIRRSIVEACEEWGIFQVVDHGVDSEIVSDMTRLAGHFFALPTEEKLRFDMSGGKKGGFNISSHLQGEVVKDWRELVTFFSYPIEKRDYSLWPNKPEGWAAKTAEYSEKLMGLACKLLEVLSEAMGLEKGALRKTCVDLDQKIVVNFYPKCPEPDFTLGLKRHTDPGTITLLLQDQVGGLQATKDGGRTWITVQPVQGAFVVNLGDHGHYVSNGRFKSGDHQAVVNSKSSRMSIATFQYPSQESIVYPLKIRDGEKPILEKPITFSEMYHMKMKNDIESARLKKQAQQQAQDFVA 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31023243 31025545 - MELO3C031936.2.1 Cme06g02383 331532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02383 346 Pfam 2OG-Fe(II) oxygenase superfamily 192 288 IPR044861 -
Cme06g02383 346 Pfam non-haem dioxygenase in morphine synthesis N-terminal 35 145 IPR026992 -
Cme06g02383 346 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 8 340 - -
Cme06g02383 346 SUPERFAMILY Clavaminate synthase-like 14 326 - -
Cme06g02383 346 Gene3D - 6 331 IPR027443 -
Cme06g02383 346 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 8 340 - -
Cme06g02383 346 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 189 291 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02383 K00475 F3H; naringenin 3-dioxygenase [EC:1.14.11.9] - csv:101215613 637.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02383 Cme-Chr6:31023243 Cme11g02247 Cme-Chr11:29630954 8.96E-148 dispersed
Cme06g02383 Cme-Chr6:31023243 Cme04g02725 Cme-Chr4:32618212 1.26E-52 transposed
Cme06g02383 Cme-Chr6:31023243 Cme09g01477 Cme-Chr9:19988899 2.28E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g273 . . Bda06g01122 . . . . Bma14g00091 . . . . . . . Cpe14g01023 . . . . . . . . Cla10g00077 Cam10g0075 Cec10g0077 Cco10g0081 Clacu10g0075 Cmu10g0921 Cre10g0338 Cone8ag0582 . . . . Csa05g00148 . Cme06g02383 Blo03g00791 . . . . . . . . . . . . . Car16g01165 . . . . . . . . . . . . . . . . Lsi09g00122 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64