Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02389 ATGGATGAAATTATTATTTCTCCTTCTTCTTCTTCACCAAATTCAATTACTACTCTTCAACAAAAGCTTCGACTTATCCTCCATAATCGCCATGAATGGTGGGCTTACTCCATTTTTTGGTTGCCTTCTGAAGATATCGATGGAAATCTTGTTTTCAAATGGGGAGGTGGCCATTTACGTGACGCACAGGACGGCGATAATGGCGGTGGTGGGGGCAGTCAGCTCAATAGTTTCGTGTTCGAAGAAGTTTCCATGGATCCAGTGGAAGCTGGCAATTTTGCCGGTTTAGAATGGTACTACACGGTATCCATCAACCAGTCGTATGGTGCAGTTGATAATGTGGTAGGTCGGGTTTTCGGCTCGAGCACATACATATGGTTGACAGCGGACAACGGCCTCTATTTTTACGACTGTGAACGAGTAAAAGATGCACGTTTGCGTGGGGTTCAAACGTTGGTTTTTGTTTCTACATCCAATGGGGTTTTGGAATTGGGTTCTTCTGAGTTGATTAAACAAGATTGGAGTTTAGTTCAGTGTGCAAAATCACTTTTTGGTTTTACTCTTTTTAAACAAAAAGATCATGTGGGTGTTGGCGGAGGAGGAATGATTCAACCACAAGCTCCGTCGTGCTCCGGTGTCATCAAGAGAGAGACGGGCAATGGTGGAGGAGGGTCGTCCTCCGATTCCCTCTCTGATAACTCTGATGGAAACTTCATGTCAACTGTAAATAACAATAACGTTGGTAAGAAGAGGGGGAAGAGATCAGCAAATAATAAAACAGAGTTGTCTTCGCTGCCGGTAAACCATGTGGAAGCTGAACGACAGCGACGACAAAAGCTGAACCAACGATTCTACGCACTCCGATCAGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCATTACTTGCTGATGCAGCAGATTACATCAGGGAGCTAAAGTCCAAGGTTCAAAAGTTGGAGTCTAAGCTAAAACAACCACAACACCAAACTAGTAGCAGCATGAGTAATGCATTTGATCAGATCAACCGAAGCACGATCTCAACGGTCGAGCAAACAACGATGAGTTACACAAACAACAACAACAACAACAACGTAGAGGTGCGACTTATTGGGTCGGAAGCAATGGTGAGAGTTCAATGTAGAGATGAAAATTACCCATCAGCAAGGCTTTTGAATGTGCTAAAAGATTTGGGACTTCAAGTTCATCATGCAAGTTTGTCAAGTGTAAATGAAATGATGCTGCAAGATGTTGTTGTTAGAGTTCCACAAGTGGTAGCCTGGAGAGAAAAGACCTTAAGAACAGCCATACTTCAAAGACTTGAATAA 1329 42.96 MDEIIISPSSSSPNSITTLQQKLRLILHNRHEWWAYSIFWLPSEDIDGNLVFKWGGGHLRDAQDGDNGGGGGSQLNSFVFEEVSMDPVEAGNFAGLEWYYTVSINQSYGAVDNVVGRVFGSSTYIWLTADNGLYFYDCERVKDARLRGVQTLVFVSTSNGVLELGSSELIKQDWSLVQCAKSLFGFTLFKQKDHVGVGGGGMIQPQAPSCSGVIKRETGNGGGGSSSDSLSDNSDGNFMSTVNNNNVGKKRGKRSANNKTELSSLPVNHVEAERQRRQKLNQRFYALRSVVPNVSKMDKASLLADAADYIRELKSKVQKLESKLKQPQHQTSSSMSNAFDQINRSTISTVEQTTMSYTNNNNNNNVEVRLIGSEAMVRVQCRDENYPSARLLNVLKDLGLQVHHASLSSVNEMMLQDVVVRVPQVVAWREKTLRTAILQRLE 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31048084 31050356 - MELO3C013772.2.1 Cme06g02389 331538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02389 442 MobiDBLite consensus disorder prediction 208 274 - -
Cme06g02389 442 Pfam Helix-loop-helix DNA-binding domain 268 313 IPR011598 GO:0046983
Cme06g02389 442 PANTHER MYC 11 441 IPR045084 GO:0003700|GO:0006355
Cme06g02389 442 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 184 IPR025610 -
Cme06g02389 442 Gene3D - 267 345 IPR036638 GO:0046983
Cme06g02389 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Cme06g02389 442 MobiDBLite consensus disorder prediction 220 251 - -
Cme06g02389 442 Coils Coil 303 330 - -
Cme06g02389 442 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 11 441 - -
Cme06g02389 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 332 IPR036638 GO:0046983
Cme06g02389 442 SMART finulus 270 319 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02389 - - K13422 csv:101210622 659.448
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00090 Cme-Chr6:579073 Cme06g02389 Cme-Chr6:31048084 8.67E-30 dispersed
Cme06g02389 Cme-Chr6:31048084 Cme11g02260 Cme-Chr11:29729018 2.49E-85 dispersed
Cme12g01562 Cme-Chr12:23013361 Cme06g02389 Cme-Chr6:31048084 1.21E-14 dispersed
Cme06g02389 Cme-Chr6:31048084 Cme06g02473 Cme-Chr6:31713059 1.14E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013416 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41547 PF14215 bHLH-MYC_N 1.00E-34 CL0161 Cme TF