Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02390 ATGGATTCGGCTCAAAATGCATCTTCAGCTGCTGGGACTGGTGGAAGCGGTGGCAATGGATCGGTTATCAATGATACGTCAGTGTCAACTACAGTGGATGATTCAAAGCAGAACTTGAATCAAGTAATCAATTCCATTCAGAAAACTTTGGGTATCCTCCATCAGCTAAATCTCACCGTTTCTAACTTCAATGCCGCCTATCAGCTACCTCTTTTACAACGCCTTTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACCGATGCGTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTCGAACAAACATTTCCTGATGAAGTTGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCCGGCTCCTCTACAACCAATGCTTAATATCTTCTGTTCAATGGGGACCACAGGATCCAAGTGTCAAATCATTTCCTGTCTTCAAGCAAGTTGGCCTTTCAATTTCTCACCATGGATTGGTGGGTCCCTCGGAAGCAAAAAGGATAGCGCAAGCACAAAGTATGTTACCAAATGGGGACATGAAGGTTAAGATGGAGGTTTAA 618 42.88 MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAARLLYNQCLISSVQWGPQDPSVKSFPVFKQVGLSISHHGLVGPSEAKRIAQAQSMLPNGDMKVKMEV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31068303 31073664 - MELO3C013773.2.1 Cme06g02390 331539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02390 205 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 1 75 - -
Cme06g02390 205 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 76 141 - -
Cme06g02390 205 MobiDBLite consensus disorder prediction 1 28 - -
Cme06g02390 205 Pfam Transcription factor subunit Med10 of Mediator complex 33 131 IPR019145 GO:0003712|GO:0006357|GO:0016592
Cme06g02390 205 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED 1 75 - -
Cme06g02390 205 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED 76 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02390 K15151 MED10, NUT2; mediator of RNA polymerase II transcription subunit 10 - csv:101214413 255.373
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g239 . . . . . . . . . Cmo16g01276 . . . . . Cpe14g01016 . . . . . . . . Cla10g00084 Cam10g0081 Cec10g0085 Cco10g0088 Clacu10g0083 Cmu10g0929 Cre10g0344 . Cone12ag0590 . . Lsi07g01110 . . Cme06g02390 . . . . . . . . . . . Cma06g00584 Cma16g01230 . Car16g01159 Cpe08g00915 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008111 2 0 1 2 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34