Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02394 ATGGGCATGATGGGTGGACGACAAAGGACTTACACCGCTAATTCCACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATATTCCCTCAAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGGAGGGAGGCTCAAACGATGAGTTTGATAGATCATCCAAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCATACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATTCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGTCAAGGACACATACATCGGGATGTGAAGGCTGGAAACATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGCGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAACAGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGTCTGGTGAAAGATCAAACCAAGAGACCAACAGCTGAGAAACTTCTAAAGCACTCCTTTTTCAAGAATGCTAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTCGCTAATTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCGGAGCAAGAAGCATTGTCACAGAGTGAGTACCAGCGAGGAGTAAGTGCGTGGAACTTTGATGTTGAAGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTCTATCCTCGATCTATTTTGAAGAATTTCAATTCGTGTAATGAATCATCTCAGGATGAACATGGAGTAGGAGCAAGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAACAAAAGGGGAAACTTTGTGGAAAGTGATGCTCTGAAAGCGGGGTTGCAAGAAAAAACTGGAAAGAGAAATGGAACTAGCACCGAAGCAGAAGCCTCTACCTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAAGTGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTTTACCTGGCATTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCAGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCACCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATTGACGACAAATCCAAAGCTAATCTTGTACAAATTAAGGGACGTTTTTCAGTGACATCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACAGTTTCACGTCGGTCTTCACAGAACTCTCCTCTACGAAAGTCAGCTAGTGTTGGTGATTGGATTTTCGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGGCTTCCAACACAAACGTTCCCACATCAATTCTTCTGCCTCATCTTCAGAATCTTTTCCATCAGACATCGATTCAACAGGATCTTATAGTGAACTTGTTGAATAGCTTACAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTACCTCCATTGCCCCGAAGCTCAGAGAATAATGGAAGTGCTGAAACAGCGGCAGTTGAGAGAGAGCGTTTACTTCTGCGGAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACTTACGAATTGACCGCCGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTTAACTCGGCATCTGGTCAGGAAGAAAATGAGATCAAAAGGGAAGAAAATGTCTAA 2190 43.01 MGMMGGRQRTYTANSTDYKLLEEIGYGASATVFRAIYIPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPEVSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFYPRSILKNFNSCNESSQDEHGVGASGQGLSQVECLNKRGNFVESDALKAGLQEKTGKRNGTSTEAEASTSGQDIVQGKTKTQVPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSIDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDSKQSVSQPPKEASNTNVPTSILLPHLQNLFHQTSIQQDLIVNLLNSLQTADVVDATQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASGQEENEIKREENV 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31100278 31109821 + MELO3C013777.2.1 Cme06g02394 331543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02394 729 MobiDBLite consensus disorder prediction 485 538 - -
Cme06g02394 729 CDD STKc_OSR1_SPAK 17 279 - -
Cme06g02394 729 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Cme06g02394 729 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Cme06g02394 729 MobiDBLite consensus disorder prediction 485 506 - -
Cme06g02394 729 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cme06g02394 729 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02394 729 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02394 729 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g02394 729 SUPERFAMILY Protein kinase-like (PK-like) 17 335 IPR011009 -
Cme06g02394 729 MobiDBLite consensus disorder prediction 431 465 - -
Cme06g02394 729 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 721 - -
Cme06g02394 729 Coils Coil 343 363 - -
Cme06g02394 729 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 721 - -
Cme06g02394 729 MobiDBLite consensus disorder prediction 426 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02394 Cme-Chr6:31100278 Cme09g00387 Cme-Chr9:3475453 0 dispersed
Cme06g02394 Cme-Chr6:31100278 Cme06g00521 Cme-Chr6:3294460 4.37E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64978 PF00069 Pkinase 5.80E-61 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02394 - - csv:101213683 1412.9