Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02398 ATGGAAACTCAAGAAACCACTGAAGAAATCATAGCGAGCATCAAAGATAAGCGTCAAGAACTCGAAGCTCGCATTCTTGCCCAGCACTCAAGCCAGTTGGAGCTTCTTTCTTCTCTTGAATCTCTTGTTCCTGATATCGTCTCTTCTCTCGACCTTTCTCTCAAGGTTGTTTCCTCCTTCAATGGCCGTCCTTTTACTCCTACACCCGTTCTCCCTGAACTCAAGAACAAACCCTCTAAATATCCTTTATTGACTACTAACTCTCTGCCCCACAAATCCCGCCCTAATCTTCTTCCGTCAGGAGAAGCAAAACCCACGATTCAGAAGAATCAAAATGCGAAGGCGTATTCGGAATCCAATTCTGATCGTAAGCGAGCTCGCCAGCCGGACGGGGGGAAGTTTTCGATGGATGATAGTGGAAGCCCTTTGTCGGTTGTGCGGTCGATGGTGGCGGTTTGTTTACTTGAACGGGTGCCTTTTACAACGATTGATTCGTCGACGGTGTTGAGGAAATTGGAGAATGATCAGAAGGCTACATCGGCGGAGAAGGCGGCGTTGCGGGAAGTAGGGGGCGATTCCGGTGCGATACTGGCGGTGGAGATGGCTTTGAGGTCGATGGCGGAGGATAGTGGTGGGGTTGAGTTGGAGGAGTTTGTGGTGAGTGGGAAATCGAGAGTGATGGTATTAGGGATTGATCGAACTCGGCTTATGAAGGAACTGCCTGAAAGTGCAAACTTTCAGTTGCAGGAATCAAGTTTGGGAGAGGGTAATTCGAGCCACAATCAGAATCAGCAAGTGGTGAGTGGTGGTGGCGTGGATGTTAATGGCGGAGTGTTTGGGATGGGAGGGCCAATGCCGAGGCCGATACCGGAGATGTGGATGGGGCCTGGAGACCCCAATATACAGGGACTGACACCCATGTTTCCGGGAAGTGGACCCGGCGGTGCAATGGCAGGGGGAAGAGGTGCGCCTAGGATGATGGGGATGATGGGGATGCCTAGAGGGATGGGACTTCCACCATTGCACAGGCCATTGATGGGGCCAAATGTGCCAATGGCTGGCCCCAATTCAATGCCGCAGAAGCCTAGAACTGAAGAGGATGACATGAAGGATCTCGAGGCCTTGTTGAGCAAGAAGTCTTTCAGAGAATTGCAAAAGTCTAAGACTGGAGAGGAGCTTTTGGACCTCATTCACCGGCCAACTGCCCGGGAAACTGCTGTCGCTGCAAAGTTTAAAACTAAAGGTGGTTCACAACTGAAGGAATACTGCTCATCCTTGACAAAAGAGGACTGCCGGCGTCAATCTGGCTCGTTTATCGCATGCGAGAAGGTTCATTTTCGGCGAATAATTGCTCCACATACAGACATCAATCTGGGTGACTGCTCATTTCTTGATACTTGTCGTCACATGAAGACATGCAAGTATGTTCATTATGAGCTTGATCCTATTCAAGATGTACCACCTATGCTGATGGGAGCGGGATCCATTCCTCCTCCCAAATCACTAAAGCCTCAGCGAGCTGAATATTGTTCAGAGGTGGAACTTGGTGAACCACAATGGATTAACTGTGATATTCGTAATTTTAGAATGGATATTTTGGGGCAATTTGGAGTGATTATGGCTGATCCACCGTGGGATATTCATATGGAATTGCCTTATGGGACAATGGCTGATGATGAAATGCGCAATCTTAATGTTCCTGCACTTCAGACTGATGGGCGGACAGGCCACTGGCTCAATCATAGTAAGGAGCATTGCCTTGTCGGAATAAAGGGAAACCCAGAAGTTAACAGGAATATTGATACAGATGTTGTAGTTGCTGAGGTTCGAGAAACAAGCCGCAAACCAGATGAGATGTACCCTTTGCTTGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAATTGTTTGCTCGGATGCACAACACTCATGCAGGGTGGATATCTCTTGGTAATCAATTGAGTGGAGTGCGATTGGTTGATGAAGGGCTAAGAGCAAGGTTCAAGGCTGCATATCCAAATGTGGAGGTTCAACCGTCGTCTCCTCCAAGGGCTTCCATGGAAATTGATTCTGGGGCTGCCCAAATGAGGAGTCCCTTTGCAGTATCAGAATCAAAGCCACCATATGGAGGGGACCCTACAATTCCTGAGGTCTCATATTCAGCAGCAGCAGCAGGTACCCCTGATAAAGCAATTGCAGTAGGAATTGACACGGTTAACTGA 2220 48.47 METQETTEEIIASIKDKRQELEARILAQHSSQLELLSSLESLVPDIVSSLDLSLKVVSSFNGRPFTPTPVLPELKNKPSKYPLLTTNSLPHKSRPNLLPSGEAKPTIQKNQNAKAYSESNSDRKRARQPDGGKFSMDDSGSPLSVVRSMVAVCLLERVPFTTIDSSTVLRKLENDQKATSAEKAALREVGGDSGAILAVEMALRSMAEDSGGVELEEFVVSGKSRVMVLGIDRTRLMKELPESANFQLQESSLGEGNSSHNQNQQVVSGGGVDVNGGVFGMGGPMPRPIPEMWMGPGDPNIQGLTPMFPGSGPGGAMAGGRGAPRMMGMMGMPRGMGLPPLHRPLMGPNVPMAGPNSMPQKPRTEEDDMKDLEALLSKKSFRELQKSKTGEELLDLIHRPTARETAVAAKFKTKGGSQLKEYCSSLTKEDCRRQSGSFIACEKVHFRRIIAPHTDINLGDCSFLDTCRHMKTCKYVHYELDPIQDVPPMLMGAGSIPPPKSLKPQRAEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVVVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWISLGNQLSGVRLVDEGLRARFKAAYPNVEVQPSSPPRASMEIDSGAAQMRSPFAVSESKPPYGGDPTIPEVSYSAAAAGTPDKAIAVGIDTVN 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31117987 31123795 - MELO3C013781.2.1 Cme06g02398 331547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02398 739 MobiDBLite consensus disorder prediction 67 139 - -
Cme06g02398 739 MobiDBLite consensus disorder prediction 103 117 - -
Cme06g02398 739 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 515 632 IPR029063 -
Cme06g02398 739 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 1 573 - -
Cme06g02398 739 Pfam MT-A70 572 652 IPR007757 -
Cme06g02398 739 MobiDBLite consensus disorder prediction 118 132 - -
Cme06g02398 739 ProSiteProfiles MT-A70-like family profile. 573 672 IPR007757 -
Cme06g02398 739 Coils Coil 4 24 - -
Cme06g02398 739 Coils Coil 169 189 - -
Cme06g02398 739 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 573 685 - -
Cme06g02398 739 MobiDBLite consensus disorder prediction 80 94 - -
Cme06g02398 739 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 1 573 - -
Cme06g02398 739 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 573 685 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02398 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] - csv:101210377 1343.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02398 Cme-Chr6:31117987 Cme07g01813 Cme-Chr7:23567060 6.40E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g223 . . . . . . . Bma14g00107 Cmo06g00594 Cmo16g01270 . . . . . . . . . . . . . . Cla10g00089 Cam10g0089 Cec10g0093 Cco10g0095 Clacu10g0090 Cmu10g0937 Cre10g0351 . . . . Lsi07g01118 . . Cme06g02398 Blo03g00810 . Bda07g00146 . . . . . . . . Cma06g00592 Cma16g01226 Car06g00522 Car16g01154 Cpe08g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009638 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33