Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02413 | ATGGCAGCGTCAATGGCGTCGTCTAAGCTAACGGAAGGAGCAGTGATGGTGATATGCAAGAGGGAATCTTCTGCAGAGACGTTCCAGCCGATTTTACAAGTAATTGACTTAAAATTGGTTAACACTTCGCAACAATCAGGTAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTTCCAGCAAGGAATGCTGGGCACTCAGCTCAACGAATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATTGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGATGTGATAGAGGAAGTGTGTGACATTATTGGTGAACCTGTATCTGCCACAAGATCGTCAGCTAGTGCATTTAGTGGAAATCCCCTATCCTCTGTGGGAGGCCTGGGGGCTTCACCTGGCAGTGGAATGATTGGTAAGGGAAATGTATCGGGTGCGTCTTTTGAACAGCCTAAAGGGAATCAATCACATGTACCACACATGGGATCTTATTCTAATCCTCCTGAGACTGGAAGATTCTCTGCATCAATTGCGCCTCCTCCTTACTCTAAGACGGAACCTGGATCAAGGTTTAATGGGTCATCTCCTTTAACGGGATCATATGGTGATCAGAAGATGGCATATCATAACAGCGGATCAGATATGCCCAGGCCACCTCTAAATTCTAATGCCTATGCCCGTCCTCAGCCAATGTATCAGCAGCCACCTTCAATGTACAGTAACAGAGGACCAATAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTTCTGCTCTGAACCCTTACCAAGGTAGGTGGACAATAAAGGCTCGAGTTACTTTAAAAGGAGAACTTAGACACTACAACAATCCTCGTGGTGATGGGAAAGTGTTTTCATTTGATTTACTTGATGCTTACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCCTGAAACCTGCTCAAAAGAACTATAACCATCTCAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGATCAATCAATCCCCCAGCAGCAGTTTCATTTCCATCAGATTGGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCTATTAATCCTGCAACTTCTTTGATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGGAACTTCTGTCAAGCGGAAGGGCAAAGGTTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCCGTGAAATCTAGTAGAGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCTACAAGTCAGCTCTTTATAGAGCCAGATTTCCCTGAGGCTCATTCGCTGAGAGAATGGTTTGAAAGGGAAGGGAGGAGTACTCTTTCTGTCTCTATATCCAGGGAAGTTGCAAATGTAGGCAGGACAGATGTCAGGAAGACCATATCTCAAATTAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCCACTGTTTCATTCATTAAGGTTGACAATTTCTGCTACACAGCATGTCCTATCATGATAGGGGACCGACAATGTAGCAAAAAAGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTATATACTTCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCCTTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTATATTATTTGAAGTATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGGAAGGTTCTTTTTACAAAATTTATAATGAAGTTAAAAATAAAGGAAGAGACTTTTAGTGATGAGCAGAGAGTAAGATCAACAGTGGTAAAAGCAGAAAGCATTGATTTTTCAAGCGAATCCAGATTTCTTCTAAACTTGATGGAGAAACTCAAGCCAGAGAACAGTAGTTCTACTACCCCAAAAGCAGAAAGCACCATACATAATCTCGGTTTTCGTGACACCGCTTCTGAGAATATTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCAATTTCAGCAGAGAATATGGTACACCGAACCAAGGTGTTCAGTATGGGAACCAGTACAGTAGCTCTAGGCCTTCTCCATCCACACCGCTTAACTCGAACACATACTGCAACAGCTGTGGGGGTTCTGGCCACAGCTCAATGAACTGCCCGAGTATCATGAGCGGTCCTGCACTGTCTGTTGGAGGTGGGATGTATTCAAATCAAGCTTCTGGTCCTTCGGCTGGTACCTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCATTGGGCTAGGGATTGCCCTGGTTTGGCCAATGTCCCTCCAGCTTATGGTAACCGTGGCTTCACGGCTAGGTGA | 2586 | 43.62 | MAASMASSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEVCDIIGEPVSATRSSASAFSGNPLSSVGGLGASPGSGMIGKGNVSGASFEQPKGNQSHVPHMGSYSNPPETGRFSASIAPPPYSKTEPGSRFNGSSPLTGSYGDQKMAYHNSGSDMPRPPLNSNAYARPQPMYQQPPSMYSNRGPIAKNEAAPRIMPISALNPYQGRWTIKARVTLKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQIGEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDFPEAHSLREWFEREGRSTLSVSISREVANVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESIDFSSESRFLLNLMEKLKPENSSSTTPKAESTIHNLGFRDTASENIGGGQFVSPIRNSTNFSREYGTPNQGVQYGNQYSSSRPSPSTPLNSNTYCNSCGGSGHSSMNCPSIMSGPALSVGGGMYSNQASGPSAGTSGECFKCHQTGHWARDCPGLANVPPAYGNRGFTAR | 861 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31259518 | 31263651 | + | MELO3C013797.2.1 | Cme06g02413 | 331562 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02413 | 861 | CDD | RPA1_DBD_A | 268 | 371 | - | - | |
Cme06g02413 | 861 | MobiDBLite | consensus disorder prediction | 159 | 184 | - | - | |
Cme06g02413 | 861 | Pfam | OB-fold nucleic acid binding domain | 280 | 364 | IPR004365 | GO:0003676 | |
Cme06g02413 | 861 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 9 | 743 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cme06g02413 | 861 | SUPERFAMILY | Nucleic acid-binding proteins | 531 | 708 | IPR012340 | - | |
Cme06g02413 | 861 | CDD | RPA1_DBD_C | 534 | 707 | IPR013955 | - | |
Cme06g02413 | 861 | Pfam | Replication factor-A C terminal domain | 550 | 701 | IPR013955 | - | |
Cme06g02413 | 861 | Gene3D | - | 8 | 123 | IPR012340 | - | |
Cme06g02413 | 861 | CDD | RPA1N | 13 | 109 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Cme06g02413 | 861 | ProSiteProfiles | Zinc finger CCHC-type profile. | 786 | 801 | IPR001878 | GO:0003676|GO:0008270 | |
Cme06g02413 | 861 | Gene3D | - | 378 | 516 | IPR012340 | - | |
Cme06g02413 | 861 | ProSiteProfiles | Zinc finger CCHC-type profile. | 830 | 844 | IPR001878 | GO:0003676|GO:0008270 | |
Cme06g02413 | 861 | Pfam | Replication protein A OB domain | 389 | 492 | IPR031657 | - | |
Cme06g02413 | 861 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 224 | 707 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cme06g02413 | 861 | Gene3D | - | 265 | 374 | IPR012340 | - | |
Cme06g02413 | 861 | SUPERFAMILY | Retrovirus zinc finger-like domains | 811 | 850 | IPR036875 | GO:0003676|GO:0008270 | |
Cme06g02413 | 861 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Cme06g02413 | 861 | MobiDBLite | consensus disorder prediction | 737 | 780 | - | - | |
Cme06g02413 | 861 | CDD | RPA1_DBD_B | 400 | 507 | - | - | |
Cme06g02413 | 861 | MobiDBLite | consensus disorder prediction | 199 | 219 | - | - | |
Cme06g02413 | 861 | PANTHER | REPLICATION PROTEIN A SUBUNIT | 9 | 743 | - | - | |
Cme06g02413 | 861 | MobiDBLite | consensus disorder prediction | 735 | 780 | - | - | |
Cme06g02413 | 861 | MobiDBLite | consensus disorder prediction | 148 | 241 | - | - | |
Cme06g02413 | 861 | SMART | c2hcfinal6 | 829 | 845 | IPR001878 | GO:0003676|GO:0008270 | |
Cme06g02413 | 861 | SMART | c2hcfinal6 | 785 | 801 | IPR001878 | GO:0003676|GO:0008270 | |
Cme06g02413 | 861 | Gene3D | - | 517 | 708 | IPR012340 | - | |
Cme06g02413 | 861 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
Cme06g02413 | 861 | SUPERFAMILY | Nucleic acid-binding proteins | 384 | 511 | IPR012340 | - | |
Cme06g02413 | 861 | SUPERFAMILY | Nucleic acid-binding proteins | 265 | 378 | IPR012340 | - | |
Cme06g02413 | 861 | Pfam | Zinc knuckle | 829 | 844 | IPR001878 | GO:0003676|GO:0008270 | |
Cme06g02413 | 861 | Gene3D | - | 781 | 849 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01827 | Cme-Chr2:25012380 | Cme06g02413 | Cme-Chr6:31259518 | 4.61E-87 | dispersed | |
Cme05g02064 | Cme-Chr5:28901439 | Cme06g02413 | Cme-Chr6:31259518 | 3.04E-19 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02413 | K07466 | - | csv:101211358 | 1679.07 |