Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02416 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGAGGTGAGGATGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTTTCTGGTGCTTATAGGCAGTGCAAGCCTTGCACAGGCTCCAGTAGCTATAAGAAAGGGCAGAGACCATACCCAGATTTTGACACAGCTTCAGAAGGGGTTCCATATCCTTACATAGGAGGGGCAAGTGCAAGTTCAACCCCTGCTTGGGACTTCCCTCCTATTAACCGCCACCCTCATACAAGATCTGACTCTAGATTTAAAGCGGCTTATAGAGGAGATCAGACCCCTGGAGGCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCCGGCGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGGGAGAATTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAATCAACAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAAAATGGGAAGGGATAGTCCGATGACTTCCGCGAACAAAGACTGGACGCCGAGAAACTATAAACCTTCAGGAAGTAAAGGATTTCCATCTGACCAGCATTATGATCATGGAAACAGCCACCCATATGCAGGTTCAAGCGCCTACCCAGCAGGCAGCGCCAAAGGTGACATGTCCTCGATGGAAGCATCACGCACAACAACCTCTTCTCGAGACGAACCTTCAATCTCCATTAGCAATGCAAGCGACATTGAGGCGGAATGGGTCGAGGAAGATGAACCGGGGGTCTACATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGCGAAAGGTTTGGGGAAATGAACGCGAAGCAATGGTGGGAACATAACAGGGAGAGGATCCAAGCTCAATACCTATAA 1086 48.8 MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPINRHPHTRSDSRFKAAYRGDQTPGGDSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSANKDWTPRNYKPSGSKGFPSDQHYDHGNSHPYAGSSAYPAGSAKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31284780 31292020 - MELO3C013800.2.1 Cme06g02416 331565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02416 361 MobiDBLite consensus disorder prediction 279 296 - -
Cme06g02416 361 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Cme06g02416 361 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 361 - -
Cme06g02416 361 MobiDBLite consensus disorder prediction 11 30 - -
Cme06g02416 361 Pfam Transcription factor regulating root and shoot growth via Pin3 305 360 IPR013591 -
Cme06g02416 361 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Cme06g02416 361 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Cme06g02416 361 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 361 IPR044532 -
Cme06g02416 361 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Cme06g02416 361 MobiDBLite consensus disorder prediction 223 247 - -
Cme06g02416 361 MobiDBLite consensus disorder prediction 203 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02061 Cme-Chr5:28890581 Cme06g02416 Cme-Chr6:31284780 2.92E-103 dispersed
Cme06g02416 Cme-Chr6:31284780 Cme03g00380 Cme-Chr3:5277130 2.86E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02416 - - csv:101210860 737.643