Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02419 ATGTCGTCGAAGGTTGTGTATGAAGGTTGGATGGTGCGTTATGGCCGGCGGAAGATCGGCAGGTCCTTCATTCACATGCGGTACTTCGTGCTTGAATCTCGGTTGCTTGCGTATTATAAGAAGAAGCCTCAGGATAATCAGGTTCCAATTAAGACCATGCTAATAGATGGAAACTGTAGAGTGGAGGATCGTGGCTTGAAGACGCACCATGGACATATGGTTTATGTCTTGTCTGTTTACAACAAGAAAGAGAAGTACCATCGAATTACGATGGCGGCCTTCAATATCCAAGAAGCATTACTATGGAAGGAGAAAATAGAACTTGTCATTGATCTGCACCAAGGCTCACAAGTTCCGAATGGGAACAAATTTGTATCTTTTGAATATAAATCTGGGATGGATAATGGGAGGACTGCTTCCTCCTCAGATCATGAAAGTCAGATCAGTGCACAGGAGGATGAGGATGATGCTCATCCAAATTTACTCAGAAGGACAACCATTGGAAATGGACCTCCAGAGTCAGTGTTTGACTGGACAAGGGAAATAGGATCAGATTTTTCAAATCAAAATGCCAATAGTCAAGCTTTTTCAAGGAAGCATTGGCGTCTAGTTCAGTGCCAAAATGGACTTCGCATCTTTGAAGAGCTTGTAGAGGTTGACTACCTTCCAAGGAGCTATAGTAGGGCAATGAAAGCTGTTGGTGTAGTGGAGGCTACTTGTGAGCAAATCTTTGAACTTGTCATGAGCATGGATGGAACACGGTTTGAGTGGGATTGCAGTTTCCAGTATGGTAGCTTGGTTGAAGAGGTGGACGGTCATACGGCAATACTCTACCATAGGCTACAGCTAGACTGGTTTCCGATGTTTGTATGGCCTCGTGACCTATGCTATGTGCGCTATTGGCGCCGCAATGATGATGGAAATTATGTGGTATTATTTCGCTCAAGGGAGCATGAGAACTGTGGTCCACAACCAGGGTATGTGCGGGCCCATATTGAGAGTGGAGGATTCAACATTTCACCTCTCAAACCTCGAAATGGGAAGCCTAGAACTCAGGTGCAGCATCTCATGCAAATTGATTTGAAAGGATGGGGTGTGGGCTATCTGTCATCGTTTCAGCAACATTGTCTCTTGCAAATGCTAAATAGTGTTGCTGGGCTGCGCGAATGGTTTGCACAAACAGATGAAAGAACTGCTCCTCCGAGAATACCAGTTATGGTAAATATGGCTTCAGCTACAGTTTCATCACAGAAGAGCCTAAAAACCCAGGGGTCCAGCGTTCATGCTAGTTCTTCTATTGACCAAATGAATGCTGCAAATAGAAATTCTGTGATGTTGGATGAATACTCGGACGAAGATGAAGAATATCAAATACCTGAGTGTGAACAAGAGGTGTACCCAAATGAGCAGGAGAATGATATCAAAAGAATAGCTGTGGAAGAGGAATCAACAGATCCAATTGATTTATCCAGTTTCTCGGGAAATATAAGACGTGACGATCGTGATGGTTCTCGAGACTGCTGGAGAATTTCTGATGGGAACAATTTCAGAGTTCGTAGCAAGACCTTTTGTTTCGATAAGACTAAGATTCCGGCTGGGAAGCATTTAATGGATCTGGTTGCTGTTGATTGGTTGAAGGACACGAAAAGAATGGACCATGTTGCCAGGCGTCAAGGCTGCGCAGCTCAAGTCGCTTCAGAGAAAGGTCTTTTCTCTATCGTCATGAATGTGCAAGTACCTGGTTCGACGCACTACAGCATGATATTTTATTTTGTGACGAAGGAACTAATTCCTGGATCTCTTTTGCAACGTTTTGTTGACGGCGATGATGAGTTTCGCAACAGTAGGTTAAAACTCATTCCATCAGTTCCCAAGGGTTCATGGATTGTTCGCCAAAGTGTTGGAAGTACGCCATGCTTATTGGGAAAAGCAGTGGATTGCAACTATATTCGAGGGCCCAAGTATTTAGAGGTCGATGTTGATATCGGCTCTTCGACGGTTGCTAATGGAGTTCTGGGACTTGTTATTGGTGTAATTACAACATTGGTGGTTGACATGGCTTTCCTTATACAGGCAAATACAACAGAAGAATTACCGGAGCGATTAATTGGAGCGGTGCGAGTATCTCACATTCAGCTCTCCTCTGCCATACCCTCAAATCTAGACTCTTATCCATCTGATTGA 2184 43.96 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALLWKEKIELVIDLHQGSQVPNGNKFVSFEYKSGMDNGRTASSSDHESQISAQEDEDDAHPNLLRRTTIGNGPPESVFDWTREIGSDFSNQNANSQAFSRKHWRLVQCQNGLRIFEELVEVDYLPRSYSRAMKAVGVVEATCEQIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGNYVVLFRSREHENCGPQPGYVRAHIESGGFNISPLKPRNGKPRTQVQHLMQIDLKGWGVGYLSSFQQHCLLQMLNSVAGLREWFAQTDERTAPPRIPVMVNMASATVSSQKSLKTQGSSVHASSSIDQMNAANRNSVMLDEYSDEDEEYQIPECEQEVYPNEQENDIKRIAVEEESTDPIDLSSFSGNIRRDDRDGSRDCWRISDGNNFRVRSKTFCFDKTKIPAGKHLMDLVAVDWLKDTKRMDHVARRQGCAAQVASEKGLFSIVMNVQVPGSTHYSMIFYFVTKELIPGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEVDVDIGSSTVANGVLGLVIGVITTLVVDMAFLIQANTTEELPERLIGAVRVSHIQLSSAIPSNLDSYPSD 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31315886 31327431 + MELO3C013803.2.1 Cme06g02419 331568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02419 727 Gene3D - 1 119 IPR011993 -
Cme06g02419 727 ProSiteProfiles PH domain profile. 4 111 IPR001849 -
Cme06g02419 727 SUPERFAMILY PH domain-like 2 120 - -
Cme06g02419 727 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 508 711 IPR009769 -
Cme06g02419 727 Pfam START domain 226 369 IPR002913 GO:0008289
Cme06g02419 727 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2-LIKE 4 719 - -
Cme06g02419 727 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 4 719 IPR045096 -
Cme06g02419 727 CDD START 200 369 - -
Cme06g02419 727 MobiDBLite consensus disorder prediction 147 161 - -
Cme06g02419 727 SMART START_1 181 393 IPR002913 GO:0008289
Cme06g02419 727 SUPERFAMILY Bet v1-like 184 365 - -
Cme06g02419 727 SMART PH_update 5 113 IPR001849 -
Cme06g02419 727 ProSiteProfiles START domain profile. 201 363 IPR002913 GO:0008289
Cme06g02419 727 MobiDBLite consensus disorder prediction 135 172 - -
Cme06g02419 727 Gene3D - 201 402 IPR023393 -
Cme06g02419 727 CDD PH 7 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02419 - - - csv:101209463 1467.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01268 Cme-Chr3:22289188 Cme06g02419 Cme-Chr6:31315886 9.80E-115 dispersed
Cme05g01858 Cme-Chr5:27342690 Cme06g02419 Cme-Chr6:31315886 4.47E-100 dispersed
Cme06g02419 Cme-Chr6:31315886 Cme07g00148 Cme-Chr7:947005 9.25E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g803 . . . . . . . . Cmo06g00616 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01143 . . Cme06g02419 . . . . . . . . . . . Cma06g00610 . Car06g00543 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006393 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 5 38