Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02433 CTCTTCTTTTCTATTCTTTTCTTTGAGAACAAGAAAAAGAAACAGAGGAAGAGGCAGAAATTATATAAATTGGATTTCTCTTTTTTCTTTCTTTTCCCTCTTCGAAAATCCATAGCCGGAGCAGCCATGGCCGCTTTACAGTACCTCGATTCCCTTCGTAACTCGCATCCTGAGCTTGCTGAATGGTACAACACCCTCGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACGCTCAAGCTTGAGCAATTCGTCGCTCTGACCGTCTTCCAGGGTTTTGGGTCTGGGAATGTCGAGATTGAATTTTTGATAGCGAAATGGATTGAGAACTTAGGGTTTTTAGATGGAGAAGATTGTGGGGCTGGTGATGCACTGATTCAGTTGTATCATAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTCTCACGTCAATATGCGGAGAAGGAAGCCGCCATTAGTTATCTTGAAGGGATAATTGAGAAACTAAGGAGTACTAAAGAGCAGCGCATAGAGGAGCCTATCCTCTATATTAAGATGCAAATAGCTATTTTTAAACTTGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTATTGGAAGATGGAAAGAGCACTCTTGACAGCATGACGGACATTGATCCATCTGTTTATGCTAGCTATTATTGGGTTTCATCTCAATTTTACAAGTTCCGCCAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTAGCATACACCTCAGTGGAATCACTGTCAGACTCATTTAAATTGGATTTGGCATTTGATTTATCTCTTTCTGCACTTCTGGGAGACAACATCTACAACTTTGGAGAGCTTCTTGGACATCCTATTAGAAACTTACGCCGTTGTGAAGATACACTGCGGCTTAAAATCTCTACGCCTCATCTAATGATTGGAAAACTAACAGTGATTTGCCTCATTCTCTTCAAAGATATAAAGATCAAAAGCTTGCTGGGCACAAAGGTCGAGTGGCTTTACTACATTCTTCAGGCATTCAATTCTGGTGATTTAGTTCGCTATCAAGAACTATGCCAAGTCCATAACGCAGCTTTAAGGGCCCAACCAGCTCTAGTTGAGAATGAGAAGAAACTATTAGAGAAAATCAACATCCTCTGCCTCATGGAAATTATCTTCAGGCATGCAGGCTTTGCTTCTTTCCGGCCGTCTGAAGACCGAACCATTCCATTGAAGGTTATAGCAGAGCGGACAAAACTTTCTATAGAGGATGTGGAGCATCTACTAATGAAGAGTCTCTCTGTCCACCTTATAGAGGGTATAATTGATCAAGTCGAGGAAACGGTACACGTTTCCTGGGTGCAACCTAGGGTTCTGGGCATTCAACAGATCAAGTCCCTGCGAGACCGGCTGGACAATTGGGTGGATAAAGTGCATTCGACTTTGCTCTCAGTCGAGGCCGAGACCCCTGATCTAGTTGCATCATAA 1503 42.25 LFFSILFFENKKKKQRKRQKLYKLDFSFFFLFPLRKSIAGAAMAALQYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQGFGSGNVEIEFLIAKWIENLGFLDGEDCGAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEQRIEEPILYIKMQIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLGHPIRNLRRCEDTLRLKISTPHLMIGKLTVICLILFKDIKIKSLLGTKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFRHAGFASFRPSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEETVHVSWVQPRVLGIQQIKSLRDRLDNWVDKVHSTLLSVEAETPDLVAS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31399210 31404122 + MELO3C013814.2.1 Cme06g02433 331582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02433 500 ProSiteProfiles PCI domain profile. 245 461 IPR000717 -
Cme06g02433 500 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 333 499 - -
Cme06g02433 500 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 43 93 - -
Cme06g02433 500 SMART PINT_4 379 479 IPR000717 -
Cme06g02433 500 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 43 93 IPR035298 -
Cme06g02433 500 Pfam PCI domain 345 457 IPR000717 -
Cme06g02433 500 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 333 499 IPR035298 -
Cme06g02433 500 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 122 297 IPR035298 -
Cme06g02433 500 SUPERFAMILY Winged helix DNA-binding domain 412 462 IPR036390 -
Cme06g02433 500 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 122 297 - -
Cme06g02433 500 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 379 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02433 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - csv:101208086 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00541 Cme-Chr4:4744482 Cme06g02433 Cme-Chr6:31399210 2.49E-09 dispersed
Cme06g02433 Cme-Chr6:31399210 Cme09g00210 Cme-Chr9:1643815 9.61E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g756 Blo02g00972 . Bda06g01241 Bda08g00645 Bpe05g00514 . . . Cmo06g00624 . . . . . . . . . . . . . . . Cla10g00121 Cam10g0119 Cec10g0128 Cco10g0128 Clacu10g0125 Cmu10g0972 Cre10g0382 . . . . Lsi07g01154 . . Cme06g02433 . . . . . . Bma05g00700 . . . . Cma06g00617 . Car06g00550 . . . . . . . . . . . . . . . . . . Csa03g00125 Chy06g02180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39