Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cme06g02435	ATGTCGGCCGAATCAGAAAGAAGGGAGGAAGAAAACTGGAGGGAATTGGTGAAGAAGATGCTCCCACCTGGAGCATCTCTCCCTGAAAGTGCTAGCGATCTGGATTACTCTATAGCTATGGAATACGAGGGTCCACCAGTAGTCTATGATGTTCCAAGAGTCGAACCCCTTGATGTACATCCTCATTCAATTCCAGTTGCTGAACCTTTATCTGAATCCCAAAGGTCAATTGCAAATAACGGTCCCCCGACGATCGAACCAATTCCTTTGCCAGTCTCTCGTATTGTTGGCGTCACAAGTCCACCTACTCAGAGTCCAAGAGTATCGGGAAGTTCAGAATCTGTAGTATCCGTCTTGCAAAACCATGATTTTTCTTCAGCTTCACCTTCTGCCTCCCCAGCTTCAGTTCACAACCCTCCTAACAATCAGCCTAAACAAGTAGTTATTGATGCGAGGAGAGCACCTGTTGTCACTTTCAATACTGATAACTCCAATCGTAAAGAACTTAGCGTCGAGAAGCAAGTGTATCCAGAATATGTAGGAGTTTCAAAAGAGAAAAAGAAAAAGAAAAGTAGGGTCTGTTATAGGTGTGGGAAAGGAAAGTGGGAAACAAAGGAGTCATGTCTAGTTTGTGATGCCAAGTATTGCAGCAATTGTGTGCTTAGGGCTATGGGATCAATGCCTGAAGGGCGTAAATGTGTCACTTGCATCGGTGATCCCATAGACGAATCTAAGAGGTCAAAATTGGGCAAGCATTCGAGGGTCTTGTCTCGACTACTTAGTCCTTTGGAAGTGAAGCAAATTATGAAAGCTGAGAAAGAATGTCCTGCTAATCAACTTCGCCCAGAACAGCTGATTGTAAATGGATTACCTCTAAGGTCCGAAGAGATGGCAGAATTACTTGGATGCCCTCTTCCTCCACAGAAATTGAAACCTGGGAGATATTGGTACGACAAAGAGTCTGGTCTCTGGGGAAAGGAAGGAGAAAAGCCAGATAGAATCATTAGTTCAAACTTAAGTTTCACTGGAAAACTTAGCCCCCATGCAAGCAATGGAAACACTGAAGTTTACATCAATGGTCGAGAAATCACTAGACTCGAATTAAGGGTGCTTAAGTTGGCAAATGTACAATGCCCACGTGACACGCATTTTTGGGTCTATGACGACGGTCGCTATGAGGAAGAAGGTCAAAACAATATCAGAGGAAATATTTGGGAGAAGGCTTCAACACGCTTTGTTTGTGCTTTGTTCTCATTGCCCGTGCTACATGGTCAACCACCTCATGGAATGAGAGAAGAGGCTAGCAATTATACAACAGTCCCCAACTACTTTGAGCAACAAAAGAGGATTCAGAAACTTCTTCTCATTGGGATTGAAGGCTCTGGAACTAGCACTATCTTCAAGCAGGGAAAATTTTTGTATGGGAACAGATTTAATGAAGAAGAACTTCAAGACATCAAACTAATGATTCAGAGTAATATGTACAAGTATCTTAGCATCTTACTAGATGGTCGAGAACGCTTTGAGGAGGAGATCATAAACAGGAAAAAGGCTTCAAATTCCCAGGGGGATCAAGCTCTTGAAACTGATGGAGAGAAGGAAGCTAGTGAAAGCATATATTCCATCAACCCAAGGTTGAAACATTTTTCCGATTGGCTCCTCGATATCATTGCCACTGGAGATTTGGACGCATTCTTCCCCGCTGCAACTCGTGAGTATGCTCCATTAGTTGAAGAGTTATGGAAGGACCCTGCAATCCAGGAAACTTACAAGAGAAAAAGTGAGCTCCACTTTCTTCCCGATGTTGCGGAGTATTTCTTAAGCAGGGCAGTGGAGGTTTCAAGTAACGAATACGAACCTTCTGATAGAGATATCCTGTATGCAGAAGGAGTAACCCAAGGAAATGGATTGGCTTTCATGGAATTTTCACTTGATGATCGGAGTCCAATGTCCGAGACCTACACTGATAATCTCGAAGCTCCGCCCCCACCTCTCACTAGATATCAGCTTATAAGAGTTAGTGCCAAGGGGATGAATGAAGGGTGCAAGTGGGTTGAGATGTTTGAAGATGTTCGAGTCGTCGTCTTTTGCGTTGCTCTTAGTGATTTTGATCAGATGTCCCTTGCCCCAGAAGGTAGCGGCAGCGGAAACCTATTACAAAACAAGATGATGCAGAGCAAGGAGCTTTTTGAGACAATGGTCCGACACCCTTGCTTCAAAGATACCCCATTTGTATTGATACTCAACAAGTACGATCTATTTGAAGAGAAAGTAAATCGGGGGTCATTGAATGTTTGTGAATGGTTCAACGATTTCAGCCCAGTACGCCCATTGCATAGCAACCAGTCACTATCTCATCAAGCTTACTACTATGTAGCTATGAAATTCAAAGACCTTTATCAATCCATTACAGGTCGTAAACTATTCGTGTGGCAAGCTAGAGCAAGGGATCGAGTGACTATTGATGAGGCATTCAAGTATATAAGAGAAGTTGTCAAGTGGGATGAGGAGAAAGAGGAGAACTACTATGGAGGACCTGAAGATTCCTTTTACAGCACAGATGTGAGCTCATCTCCATTTGTTAGACAACAATGA	2595	43.28	MSAESERREEENWRELVKKMLPPGASLPESASDLDYSIAMEYEGPPVVYDVPRVEPLDVHPHSIPVAEPLSESQRSIANNGPPTIEPIPLPVSRIVGVTSPPTQSPRVSGSSESVVSVLQNHDFSSASPSASPASVHNPPNNQPKQVVIDARRAPVVTFNTDNSNRKELSVEKQVYPEYVGVSKEKKKKKSRVCYRCGKGKWETKESCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGDPIDESKRSKLGKHSRVLSRLLSPLEVKQIMKAEKECPANQLRPEQLIVNGLPLRSEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDRIISSNLSFTGKLSPHASNGNTEVYINGREITRLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVLHGQPPHGMREEASNYTTVPNYFEQQKRIQKLLLIGIEGSGTSTIFKQGKFLYGNRFNEEELQDIKLMIQSNMYKYLSILLDGRERFEEEIINRKKASNSQGDQALETDGEKEASESIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKSELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQMSLAPEGSGSGNLLQNKMMQSKELFETMVRHPCFKDTPFVLILNKYDLFEEKVNRGSLNVCEWFNDFSPVRPLHSNQSLSHQAYYYVAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDEEKEENYYGGPEDSFYSTDVSSSPFVRQQ	864

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	31403596	31409994	-	MELO3C013815.2.1	Cme06g02435	331584

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cme06g02435	864	Pfam	G-protein alpha subunit	447	832	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3	26	860	-	-
Cme06g02435	864	ProSiteProfiles	PH domain profile.	1	22	IPR001849	-
Cme06g02435	864	SUPERFAMILY	Transducin (alpha subunit), insertion domain	478	628	IPR011025	GO:0007165
Cme06g02435	864	MobiDBLite	consensus disorder prediction	69	88	-	-
Cme06g02435	864	MobiDBLite	consensus disorder prediction	96	115	-	-
Cme06g02435	864	Gene3D	-	646	841	IPR027417	-
Cme06g02435	864	SUPERFAMILY	FYVE/PHD zinc finger	176	236	IPR011011	-
Cme06g02435	864	MobiDBLite	consensus disorder prediction	840	864	-	-
Cme06g02435	864	Gene3D	-	479	629	IPR011025	GO:0007165
Cme06g02435	864	MobiDBLite	consensus disorder prediction	97	115	-	-
Cme06g02435	864	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	26	860	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	MobiDBLite	consensus disorder prediction	850	864	-	-
Cme06g02435	864	MobiDBLite	consensus disorder prediction	124	144	-	-
Cme06g02435	864	SMART	galpha_1	445	842	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	447	837	IPR027417	-
Cme06g02435	864	CDD	G-alpha	451	835	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	PRINTS	Alpha G protein (transducin) signature	452	467	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	PRINTS	Alpha G protein (transducin) signature	618	640	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	PRINTS	Alpha G protein (transducin) signature	691	719	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	PRINTS	Alpha G protein (transducin) signature	744	753	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
Cme06g02435	864	ProSiteProfiles	G-alpha domain profile.	449	843	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cme06g02435	-	-	-	csv:101207353	1694.48

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Cme06g00114	Cme-Chr6:720951	Cme06g02435	Cme-Chr6:31403596	8.90E-08	dispersed
Cme06g02435	Cme-Chr6:31403596	Cme12g02053	Cme-Chr12:26025840	0	dispersed
Cme06g02435	Cme-Chr6:31403596	Cme11g00480	Cme-Chr11:4668830	0	transposed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi2g752	.	.	Bda06g01242	.	.	Bpe07g00239	.	.	Cmo06g00625	Cmo16g01243	.	.	.	.	.	Cpe14g00990	.	.	.	.	.	.	.	.	Cla10g00122	Cam10g0120	Cec10g0129	Cco10g0129	Clacu10g0126	Cmu10g0973	Cre10g0383	Cone8ag0500	Cone12ag0501	.	.	Lsi07g01155	.	.	Cme06g02435	.	.	.	.	.	.	.	Bma12g00240	.	.	.	Cma06g00618	Cma16g01196	Car06g00551	Car16g01126	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Csa03g00126	Chy06g02179	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0002284	3	3	2	2	2	1	3	1	1	2	1	1	3	2	2	3	1	3	3	1	2	2	2	2	2	2	2	4	2	2	62