Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02439 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACACCGCCTCCTCCTACTACTCAGGAGCAGACTACAACCACTAGTGCTGGCACGGTCAATCCTGATTGGTCGGGTTTTCAGGCATATTCACCTATTCCTCCGCATGGTTTCTTGGCGTCAAGCCCCCAGGCTCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATGCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCAAATGGCGTCACTGAGGCCTCTGGTAATACGGCAGGCAGTTTGGAAGGAGACGTTAAGCCACCTGAAGTAAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGATGGGTAAAACATCTGGAACATCTGCCAACGGAGCATACTCTAAGAGTGCTGAGAGTGCCAGTGAAGGTACAAGTGAAGGAAGTGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACAGTTTGGAAGTTGAAGTATCTCAGAATGGTAACTCAATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGTCATCCCATTGGCAACTGCTGGGGCCCCAGGAGTTGTTCCCGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCACTATTCCTGCAATGCGTGGGAAGGTTCAATCGACTCCAGTTGCTGGAGGACTAGTTACCACTGGATCTCGTGATAGCATACAGTCACAGCTTTGGCTGCAAGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGATGAATTAGCACACCGAGCTGAAGCCTTGCAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTTAACCGGATAAGGAGTGAATATGAACTGCTACTTTCGGAGAATGCTTCTCTGAAGGAAAGACTCGGGGAAGTTTCGGGAAACGAAGAACTAAGGACCAGCAGGAACGGCCAGCGTACAAGTAACGAAACCACCACACAACCTACAGAGTCAGAGGTCGTGCAAATTGGTAACAAGAATTGA 1218 47.37 MSGSEMEKPPKDKETKTPPPPTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGVTEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNEMGKTSGTSANGAYSKSAESASEGTSEGSDANSQNESQPKLGSRQDSLEVEVSQNGNSMHGTQNGGSNTQAMAVIPLATAGAPGVVPGPTTNLNIGMDYWGASSTIPAMRGKVQSTPVAGGLVTTGSRDSIQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYELLLSENASLKERLGEVSGNEELRTSRNGQRTSNETTTQPTESEVVQIGNKN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31429038 31434138 + MELO3C013820.2.1 Cme06g02439 331588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02439 405 MobiDBLite consensus disorder prediction 374 405 - -
Cme06g02439 405 MobiDBLite consensus disorder prediction 1 15 - -
Cme06g02439 405 MobiDBLite consensus disorder prediction 300 322 - -
Cme06g02439 405 Pfam Disordered region downstream of MFMR 136 263 - -
Cme06g02439 405 MobiDBLite consensus disorder prediction 1 43 - -
Cme06g02439 405 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 305 320 IPR004827 GO:0003700|GO:0006355
Cme06g02439 405 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 400 - -
Cme06g02439 405 Pfam G-box binding protein MFMR 3 97 IPR012900 -
Cme06g02439 405 SMART brlzneu 298 362 IPR004827 GO:0003700|GO:0006355
Cme06g02439 405 CDD bZIP_plant_GBF1 303 353 IPR045314 GO:0003700|GO:0006355
Cme06g02439 405 Coils Coil 318 366 - -
Cme06g02439 405 MobiDBLite consensus disorder prediction 140 226 - -
Cme06g02439 405 Gene3D - 301 354 - -
Cme06g02439 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 300 363 IPR004827 GO:0003700|GO:0006355
Cme06g02439 405 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 400 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cme06g02439 405 MobiDBLite consensus disorder prediction 114 133 - -
Cme06g02439 405 MobiDBLite consensus disorder prediction 19 41 - -
Cme06g02439 405 MobiDBLite consensus disorder prediction 364 405 - -
Cme06g02439 405 MobiDBLite consensus disorder prediction 147 226 - -
Cme06g02439 405 Pfam bZIP transcription factor 298 360 IPR004827 GO:0003700|GO:0006355
Cme06g02439 405 SUPERFAMILY Leucine zipper domain 301 357 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g00153 Cme06g02439 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02415 Cme-Chr4:30783226 Cme06g02439 Cme-Chr6:31429038 1.07E-08 dispersed
Cme06g00124 Cme-Chr6:786305 Cme06g02439 Cme-Chr6:31429038 1.40E-44 dispersed
Cme06g02439 Cme-Chr6:31429038 Cme10g00324 Cme-Chr10:2130478 5.29E-11 dispersed
Cme08g00828 Cme-Chr8:5489091 Cme06g02439 Cme-Chr6:31429038 2.77E-30 transposed
Cme04g00153 Cme-Chr4:1163943 Cme06g02439 Cme-Chr6:31429038 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41548 PF16596 MFMR_assoc 1.60E-50 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02439 K09060 - csv:101206627 749.199