Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02447 ATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGCCTCAACTCCTTGTGGTGTGAGATTACTTGGTGGCAATGCAGAAACCTTTTCCCGTTCAAGTGGCATGTCACATGAGAGGGATGTCTTTTCAAAAAGGAGAGTAGACAAGTTTGAATATGATGATTTAGAGTGGACTGAGAAGATTCCAGAATGCCCCGTGTATTCTCCGTCAAAGGAGGAATTTGAGGATCCTTTGGTCTATTTGCAAAAGATAGCTCCTGAAGCCTCGAAATATGGCATATGCAAGATTGTTTCCCCACTGATTGCTTCTGTTACTGCTGGGGCTGTATTAATGAAGGAGAAACCAGGGTTCAAGTTTACAACGAGAGTGCAACCTTTTCGTTTTGCTGAATGGGATACTGATGACCAGGTTACCTTTTACATGAGTGGAAGGAACTATACATTTCGCGATTTTGAAAAAATTGCGAACAAGATATATGCTCGTAGATATAGTAGTTCTGGATGTCTACCTGCGTCATATATGGAAAAGGAATTTTGGCGTGAAATTGCTTGTGGGAAGACAGAAAGTGTTGAATATGCTTGCGATGTTGATGGTAGTGCGTTTTCATCTTCTCCATCTGATGAGCTTGGGACAAGTAAATGGAATTTGAAGAACCTTTCACGGCTACCCAAGTCCATATTGCGCCTTCTGGAAAATCCAATACCGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCTTGGCACGTGGAGGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTGGTCAGGGAGCATGTATACACCCGTGATATCTTATCAACTGGTGGAGAGGATGGAGCATTTGACGTTCTTCTGGGGAAAACGACGTTGTTTCCACCAAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTCCAGCAACCTGGAGAGTTTGTAATTACCTTCCCCAGAGCATATCATGCTGGATTCAGTCATGGCTTCAATTGTGGTGAGGCAGTGAACTTTGCGATGGGTGATTGGTTCCCCTTGGGAGCTGTTGCCAGTCAGCGTTATGCACTCCTAAACAGGATGCCTCTAATTCCTCATGAAGAGCTTCTATGTAAAGAAGCAATGCTTCTCTACACAAATTCAGAATTTGAAGACCCACATTATGCTTCTGCAGAGTTAGCCTCTCATTATTCTATTAAGACTTCTTTTGTAAGTATGATTCGCTTCCAGCATCGTGCCCGATGGACATTGATGAAATCAAGAACATGCACTGGTGTATCACCAAATCTTCATGGAACCATACTATGCAGCTTATGCAAACGTGACTGCTATATATCTTATATCAACTGCAGTTGTTATGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCATGTGGTAGCAACCGCACACTCTTCTTGTGTGAGGATATTTTAGATATGGAATCCGCAGCTAAGAAATTCGAGCAGGAATGTGGAGGCCAAACTAATAATGTTGAACTATATTCTTATCCTCTGTTAAATTTATTTAAGGGAGCTGATTCGGATGGATACGCTACTTATTGCGAAATAGAAGTGCAGTTGGATTCTGAATTTACTGCTGCAGCTGCAGCGATTTGTCGTTTGGGAGAAAATGAGTGTGTTTCCAGTAGCCAGCCTACACAGAGTTGTATAACTGAAAACCATAGACCTGAACCATCAGATCTTTCTCTCTCTTGTGAAGCGTCAACTCTTTGTTCAGTTGTAGACTATAATGAAACATTGTCCACCACTAGCCATGTACCAAGAAATTCAAGTTTTGAGCACTCTTCTGAGATTTCTAACCGTGTACTTGAGTCATCACGTAATAATTGCTCAAGTTCACCTCTAGGCAGTGTACGTGCATCGGAGCTAACCACTTTAGTAGATCGAGAAAGTGATGATTCTGATGCAGAAATTTTTAGGGTCAAGCGTCGCCCGCTGAAGCTGGATAAAAAGACTGGGAGTGATGCCACGTGTTTAAAGCAGTTTGCTGGCCAGGATGGCCGCAAAAGATTGAAGAGAATCCAAACAAATGGGAACTCTGAGCAACTAAAGCCATCGGATTGCCATGGAACCAACAAATCACGTTATAAATTCTACCCTTCTACTGCTCATAAAGACTCTGCAGAAAGTGATGCAATTGAAAAGTGCAGCAGGGGAAGTATCAAGTGCCAGAGATTCAGCAATGAGAAGTTAATGAATAGACAGCGCGGCTTCGAACTCAACAACCGCAGAAGGGAACGGTTTCAGCATGAGTTGGGAAAGCCCAAAAGGGTTCATCATCCACATCCCTCTATGGAAATTGGGCCTAAGCGTCTCAAAATCAGAGGCCCAACATTCAGTGGCCCAATACCAGATCAGATTGATTCCAAATGGGCCTAA 2487 42.54 MMNRSGGDALRASTPCGVRLLGGNAETFSRSSGMSHERDVFSKRRVDKFEYDDLEWTEKIPECPVYSPSKEEFEDPLVYLQKIAPEASKYGICKIVSPLIASVTAGAVLMKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYTFRDFEKIANKIYARRYSSSGCLPASYMEKEFWREIACGKTESVEYACDVDGSAFSSSPSDELGTSKWNLKNLSRLPKSILRLLENPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTRDILSTGGEDGAFDVLLGKTTLFPPSILLDHKVPVYRAVQQPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLIPHEELLCKEAMLLYTNSEFEDPHYASAELASHYSIKTSFVSMIRFQHRARWTLMKSRTCTGVSPNLHGTILCSLCKRDCYISYINCSCYGHPVCLRHDIKSLNFSCGSNRTLFLCEDILDMESAAKKFEQECGGQTNNVELYSYPLLNLFKGADSDGYATYCEIEVQLDSEFTAAAAAICRLGENECVSSSQPTQSCITENHRPEPSDLSLSCEASTLCSVVDYNETLSTTSHVPRNSSFEHSSEISNRVLESSRNNCSSSPLGSVRASELTTLVDRESDDSDAEIFRVKRRPLKLDKKTGSDATCLKQFAGQDGRKRLKRIQTNGNSEQLKPSDCHGTNKSRYKFYPSTAHKDSAESDAIEKCSRGSIKCQRFSNEKLMNRQRGFELNNRRRERFQHELGKPKRVHHPHPSMEIGPKRLKIRGPTFSGPIPDQIDSKWA 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31516896 31524396 - MELO3C013826.2.1 Cme06g02447 331596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02447 828 ProSiteProfiles JmjC domain profile. 210 380 IPR003347 -
Cme06g02447 828 SUPERFAMILY Clavaminate synthase-like 141 396 - -
Cme06g02447 828 Pfam JmjC domain, hydroxylase 240 363 IPR003347 -
Cme06g02447 828 SMART JmjN_1 62 105 IPR003349 -
Cme06g02447 828 SMART cupin_9 210 380 IPR003347 -
Cme06g02447 828 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 3 815 - -
Cme06g02447 828 Pfam jmjN domain 64 96 IPR003349 -
Cme06g02447 828 MobiDBLite consensus disorder prediction 785 805 - -
Cme06g02447 828 Gene3D Cupin 63 424 - -
Cme06g02447 828 ProSiteProfiles JmjN domain profile. 63 104 IPR003349 -
Cme06g02447 828 Pfam C5HC2 zinc finger 460 511 IPR004198 -
Cme06g02447 828 MobiDBLite consensus disorder prediction 785 828 - -
Cme06g02447 828 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 815 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02447 - - - csv:101211852 1650.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01663 Cme-Chr1:22780904 Cme06g02447 Cme-Chr6:31516896 1.11E-40 transposed
Cme03g01261 Cme-Chr3:22233737 Cme06g02447 Cme-Chr6:31516896 2.18E-12 transposed
Cme05g01133 Cme-Chr5:18102112 Cme06g02447 Cme-Chr6:31516896 1.92E-59 transposed
Cme09g01757 Cme-Chr9:22043311 Cme06g02447 Cme-Chr6:31516896 1.12E-07 transposed
Cme12g01007 Cme-Chr12:17605207 Cme06g02447 Cme-Chr6:31516896 1.26E-57 transposed
Cme12g01627 Cme-Chr12:23427548 Cme06g02447 Cme-Chr6:31516896 2.86E-75 transposed
Cme04g00144 Cme-Chr4:1071317 Cme06g02447 Cme-Chr6:31516896 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
Vvi16g116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02447 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41549 PF02373 JmjC 1.70E-39 CL0029 Cme TR