Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02454 ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCTACGCAAGCTGTTGCTTCCGGTATATTTCAGATTAATACTGCCGTTGCTACGTTTCAAAGGCTTGTTAATACCTTAGGTACACCAAAGGATACGCCTGAGCTACGCGAGAAGCTGCACAAGACAAGGTTACATATTGGACAGTTGGTTAAAGACACTTCTGCTAAACTTAAACAAGCCAGCGATATAGATCATCATGCTGAAGTGAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCTCAACGACTTGCAGCCGAGAGGGAAACAGCATATTCACCTTTTGTTCCCCAAACTAATCTACCTTCTAGCTACACAGCTGGGGAGGCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGGCAAGAGGTCTTGCTGTTGGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTCTAGTTCATGAACAGGGAGCAATGATTGATGATATTGGATCCAACATAGAGGGGGCACATGCTGCAACGTCACAGGGAACAACTCAACTTGTAAAAGCTTCAAAGACACAAAGATCGAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTCGTTGCTTAA 825 42.67 MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYSPFVPQTNLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31570340 31575247 + MELO3C013834.2.1 Cme06g02454 331603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02454 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Cme06g02454 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Cme06g02454 274 PANTHER SYNTAXIN 5 272 IPR045242 -
Cme06g02454 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Cme06g02454 274 CDD SNARE_Qa 184 242 - -
Cme06g02454 274 SMART tSNARE_6 176 243 IPR000727 -
Cme06g02454 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 5 272 - -
Cme06g02454 274 Pfam SNARE domain 218 269 IPR000727 -
Cme06g02454 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme06g02454 274 CDD SynN 24 147 IPR006011 GO:0016020
Cme06g02454 274 Gene3D - 21 134 - -
Cme06g02454 274 Gene3D - 174 274 - -
Cme06g02454 274 SMART SynN_4 16 128 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01576 Cme-Chr5:24990079 Cme06g02454 Cme-Chr6:31570340 1.41E-10 dispersed
Cme06g02454 Cme-Chr6:31570340 Cme12g01397 Cme-Chr12:21851130 4.21E-11 dispersed
Cme06g02454 Cme-Chr6:31570340 Cme08g01151 Cme-Chr8:8134579 7.73E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02454 - K08488 bhj:120089793 458.373