Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02454 | ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCTACGCAAGCTGTTGCTTCCGGTATATTTCAGATTAATACTGCCGTTGCTACGTTTCAAAGGCTTGTTAATACCTTAGGTACACCAAAGGATACGCCTGAGCTACGCGAGAAGCTGCACAAGACAAGGTTACATATTGGACAGTTGGTTAAAGACACTTCTGCTAAACTTAAACAAGCCAGCGATATAGATCATCATGCTGAAGTGAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCTCAACGACTTGCAGCCGAGAGGGAAACAGCATATTCACCTTTTGTTCCCCAAACTAATCTACCTTCTAGCTACACAGCTGGGGAGGCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGGCAAGAGGTCTTGCTGTTGGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTCTAGTTCATGAACAGGGAGCAATGATTGATGATATTGGATCCAACATAGAGGGGGCACATGCTGCAACGTCACAGGGAACAACTCAACTTGTAAAAGCTTCAAAGACACAAAGATCGAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTCGTTGCTTAA | 825 | 42.67 | MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYSPFVPQTNLPSSYTAGEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31570340 | 31575247 | + | MELO3C013834.2.1 | Cme06g02454 | 331603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02454 | 274 | Pfam | Syntaxin-like protein | 31 | 130 | IPR006011 | GO:0016020 | |
Cme06g02454 | 274 | SUPERFAMILY | t-snare proteins | 24 | 236 | IPR010989 | GO:0016020|GO:0016192 | |
Cme06g02454 | 274 | PANTHER | SYNTAXIN | 5 | 272 | IPR045242 | - | |
Cme06g02454 | 274 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 181 | 243 | IPR000727 | - | |
Cme06g02454 | 274 | CDD | SNARE_Qa | 184 | 242 | - | - | |
Cme06g02454 | 274 | SMART | tSNARE_6 | 176 | 243 | IPR000727 | - | |
Cme06g02454 | 274 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 5 | 272 | - | - | |
Cme06g02454 | 274 | Pfam | SNARE domain | 218 | 269 | IPR000727 | - | |
Cme06g02454 | 274 | ProSitePatterns | Syntaxin / epimorphin family signature. | 187 | 226 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cme06g02454 | 274 | CDD | SynN | 24 | 147 | IPR006011 | GO:0016020 | |
Cme06g02454 | 274 | Gene3D | - | 21 | 134 | - | - | |
Cme06g02454 | 274 | Gene3D | - | 174 | 274 | - | - | |
Cme06g02454 | 274 | SMART | SynN_4 | 16 | 128 | IPR006011 | GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01576 | Cme-Chr5:24990079 | Cme06g02454 | Cme-Chr6:31570340 | 1.41E-10 | dispersed | |
Cme06g02454 | Cme-Chr6:31570340 | Cme12g01397 | Cme-Chr12:21851130 | 4.21E-11 | dispersed | |
Cme06g02454 | Cme-Chr6:31570340 | Cme08g01151 | Cme-Chr8:8134579 | 7.73E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02454 | - | K08488 | bhj:120089793 | 458.373 |