Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02455 ATGGACGGGACTGCTAATGGTGGTGATTCTGGATTGGCTTCCGGGAGTGGAAACTCTCATCCGACGGTTCCGGCTCCTATTACTAATTCTAACGCGCCTCCACCGTTTCTGAGTAAGACATATGATATGGTGGATGACCCGGCTACCGATGCGGTTGTGTCCTGGAGCCCTACCAATAATAGTTTTGTGGTTTGGAATCCGCCTGAGTTCGCTAGGGATCTTTTGCCTAAATACTTCAAGCATAATAACTTCTCCAGTTTCGTCAGGCAGCTCAACACCTATGGATTCAGGAAAGTTGATCCAGACCGTTGGGAATTTGCTAATGAAGGCTTCTTAAGAGGTCAGAAACACCTGCTTAAGAGTATTACCCGGCGAAAACCTGTCCATGGGCAAAGTCAGCAACAACCACAGCAGTCTCATGGACAAAGTTCCTCAGTTGGAGCTTGTGTGGAAGTTGGTAAGTTTGGTTTGGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAAAATGTACTCATGCAGGAACTTGTGAGACTGAGGCAGCAGCAACAGACCACTGACAACCAGCTGCAAACTATGGTACAGCGTCTACAAGGGATGGAGCAGCGACAACAGCAGATGATGTCATTCCTTGCCAAGGCTGTGCAAAGTCCTGGCTTTTTGGCTCAGTTTGTGCAGCAGCAAAATGAAAGTACTAGACGCATAAGTGAAGCTAATAAAAAGCGAAGGCTAAAGCAGGATGGAATTGGGGAGTCTGAACATTCTCCTGTTCCTGATGGGCAGATTGTGAAGTATCAACCTCTCATGAATGAGGCAGCAAAAACAATGCTGAGGCAGATAATGAAAGTAGATACTTCACATTTGGATTCATTGAACAACAACACCGACAGTTTTCTAATTGGCGATGGTTTGCAATCGCCGTGCACAGCTATGGACAATGGGAACTCTTCCAGTTCTGTATCAGGCGTGACTCTTCAAGAGGTACCTCCGACCTCATCTTTTAATTCAGCTGCTTCTGGTGCTCCTCATGGCCCCTCAACAGCCAAATCAGAAATTCAATCGTCCCCCCAAGCTACAAATTCTGACAAGGTTTCAGCCGCTTCCTTTGCTCTTAATGCCGTGCGGGGTCCAGGGGCACGAGAAGCTTCTTCCTTATCAGTTTCTGAGACAGATGTAATCATGCCCGAGCTTTCCCATTTATCTGAAATGGTGTCTGAGAACATTCTTGATGTTCCTGAAGTGGATTATAGGGTGCCTGAGGCAGGAGATGGTGCATTTATAAGTCCGAATTTTTTGGATGCTAATGGAACTATTCCTATAGATATTGATAACATGTCCCCGGATGCTGATATCGATGCCTTGCTAGATAATTCCAACTTCTGGGATGATTTGCTTGTGGAAAGTCCATGTCAGGATGAGGAGGTTGACTTCATGGTTGGAGGAGGATTACCAAAGACAAACGATATGCAACCGGCAGAAAATGCATGGGACAAATCTAAACACGTGGATAAACTTACAGAACAGATGGGCCTTCTCACCTCAGAAATTAAAAGGGTTTGA 1557 45.79 MDGTANGGDSGLASGSGNSHPTVPAPITNSNAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPVHGQSQQQPQQSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESTRRISEANKKRRLKQDGIGESEHSPVPDGQIVKYQPLMNEAAKTMLRQIMKVDTSHLDSLNNNTDSFLIGDGLQSPCTAMDNGNSSSSVSGVTLQEVPPTSSFNSAASGAPHGPSTAKSEIQSSPQATNSDKVSAASFALNAVRGPGAREASSLSVSETDVIMPELSHLSEMVSENILDVPEVDYRVPEAGDGAFISPNFLDANGTIPIDIDNMSPDADIDALLDNSNFWDDLLVESPCQDEEVDFMVGGGLPKTNDMQPAENAWDKSKHVDKLTEQMGLLTSEIKRV 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31576186 31582531 - MELO3C013835.2.1 Cme06g02455 331604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02455 518 MobiDBLite consensus disorder prediction 230 259 - -
Cme06g02455 518 Pfam HSF-type DNA-binding 36 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g02455 518 SUPERFAMILY Winged helix DNA-binding domain 32 125 IPR036390 -
Cme06g02455 518 MobiDBLite consensus disorder prediction 309 362 - -
Cme06g02455 518 SMART hsfneu3 32 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g02455 518 Coils Coil 154 181 - -
Cme06g02455 518 MobiDBLite consensus disorder prediction 126 146 - -
Cme06g02455 518 MobiDBLite consensus disorder prediction 233 251 - -
Cme06g02455 518 MobiDBLite consensus disorder prediction 9 31 - -
Cme06g02455 518 ProSitePatterns HSF-type DNA-binding domain signature. 75 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g02455 518 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 503 IPR027725 -
Cme06g02455 518 MobiDBLite consensus disorder prediction 124 146 - -
Cme06g02455 518 MobiDBLite consensus disorder prediction 1 31 - -
Cme06g02455 518 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 9 503 - -
Cme06g02455 518 Gene3D - 28 126 IPR036388 -
Cme06g02455 518 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g02455 518 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme06g02455 518 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02455 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101207437 947.577
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01348 Cme-Chr2:19509543 Cme06g02455 Cme-Chr6:31576186 2.62E-54 dispersed
Cme03g02164 Cme-Chr3:28734568 Cme06g02455 Cme-Chr6:31576186 3.17E-81 dispersed
Cme04g02434 Cme-Chr4:30977962 Cme06g02455 Cme-Chr6:31576186 1.48E-73 dispersed
Cme05g00442 Cme-Chr5:3984639 Cme06g02455 Cme-Chr6:31576186 7.08E-27 dispersed
Cme05g01974 Cme-Chr5:28290590 Cme06g02455 Cme-Chr6:31576186 2.14E-51 dispersed
Cme05g02050 Cme-Chr5:28825886 Cme06g02455 Cme-Chr6:31576186 1.82E-57 dispersed
Cme06g00359 Cme-Chr6:2219235 Cme06g02455 Cme-Chr6:31576186 8.52E-67 dispersed
Cme06g02455 Cme-Chr6:31576186 Cme10g01576 Cme-Chr10:20822907 1.35E-75 dispersed
Cme09g01727 Cme-Chr9:21878183 Cme06g02455 Cme-Chr6:31576186 2.44E-45 dispersed
Cme06g02455 Cme-Chr6:31576186 Cme06g00575 Cme-Chr6:3658545 2.31E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
Vvi16g112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41550 PF00447 HSF_DNA-bind 2.80E-33 CL0123 Cme TF