Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02459 ATGGGGAAGAACAAAATCACTGACCTCAAAAACCCCCCTGACGAAATCCCCACTGTTGCTACTCCCTTCAGCGTTTTCGATACACTCTTCGGCAGCGCCGGTGTTGAAAACCCCTCCGTTTCTATCTTCTCCAGTGACAACCCTTTTCGTAGGAAAGATTCAGATTCTATTTCTCCTCCACTTGCTGAAAACAGTAGGACGAAGGGCAAGGAGAAAAGGGTTGGTATTGATTTGGACTCTACTGAAGGTGTTAAAACTTCGTCGGAGATTAAAAAATCTAAGAAGAAGGAGAAGGAGAAGTCTCGGGACCGCGAATTGGATAATGTAGATGATGATGGAGAAAGGGGTTTCGAATCGCAAGGGGGATTGAAGGATAATAGGAAGAAAGGAACGGCTTTGGGCTCTGAAACTTCAGAAAAGAGTCGTGGTTTTGACAGGAGTAAACTCGGTGAGAATGTGAAATTGATGAAAGAGAGGAAGAAGAGGAAGAGAGATGAACTTGAGAGGGAGTATGAAGCCAAAAAGTATGGCGTATCAGATGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGGAATGTTGTTGGGAAGAAGAGGAAAGCATTGGATGATCCTTCAGAGATGTTGGTTACAAAGGAAGGATTTGATGATGAAAGTAAGCTTTTGAGAACTGTTTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAAGCTTTAGCCAAGGAGTTTAGCCAATTTGGAGAGATAGATTCTGTTAGGATTCGGTCTGTACCAATTGACATTGCAAATAGCAAAAAACCAAGGAAGGGGGCAATCATTTCTAAGAAACTCAATGAAGCTGCGGACAGTTCTCATGCATACGTTGTTTTTAAAACGGAGGAATCAGCACAGGCTTCTTTGTCCCATAACATGGCTGTGTTTGCAGGAAATCATATACGAGTCGATAGAGCATGCCCACCGCATAAAAAGTTGAAAGTAGGAAATGGGCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAATTATTTTGTGGAATCGACACTATGGGATCCAGTGTTGAGGCTGTTCGGGTCATTAGAGATCCCAAGGTGAATGTAGGGAAGGGCTTTGCGTACGTCTTCTTTAAAACAAGGGAAGCAGTAAACTCCGTAGTTAATAATCAAAAACTAGAGTTGCGTGGTCGGACACTGAGGCTCTTTCATGCCAAAACAAATCCAACATCGACTCCATTTAAGAAACGGAATAGGCCACCTACAGAAGCTGATCACACCCCAGCAAAGAAAAATGCTGTGGATTCAGGTTTAGGGACACCAGACAGCAGCAAGAGGGTAACGCCAAAAGCGACCAATGCATCCTATCAAGGCTTGCGTGCAAGCAAAAGCGGTTCCCAGAAGAAGATCCATACTAAAGGCAGTAGTACGAAATGGCCGAAATCACATTCAAACAGTAAAGAGAAGCCAATAGATCACAAGAAGAGAAAAGGACCAGAGAAGACAAGTGAAAGAAAGGGTAAGAGACCAGCAGTTGCCAACAGAAAGGCTGTGGCGAATGCAACGAAAAATGGCATTGCAACACCAAAACAGGCCGGATTGAAGCGCAAGTCTGATAGCCGAAGTCCAGGGAGCTCTCACAGGAATAAGAGAGTCAAAAAGTTTAGATAG 1698 43.52 MGKNKITDLKNPPDEIPTVATPFSVFDTLFGSAGVENPSVSIFSSDNPFRRKDSDSISPPLAENSRTKGKEKRVGIDLDSTEGVKTSSEIKKSKKKEKEKSRDRELDNVDDDGERGFESQGGLKDNRKKGTALGSETSEKSRGFDRSKLGENVKLMKERKKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLFCGIDTMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAVNSVVNNQKLELRGRTLRLFHAKTNPTSTPFKKRNRPPTEADHTPAKKNAVDSGLGTPDSSKRVTPKATNASYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRKGPEKTSERKGKRPAVANRKAVANATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVKKFR 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31608798 31612128 - MELO3C013841.2.1 Cme06g02459 331608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02459 565 MobiDBLite consensus disorder prediction 65 168 - -
Cme06g02459 565 MobiDBLite consensus disorder prediction 491 520 - -
Cme06g02459 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 318 IPR000504 GO:0003723
Cme06g02459 565 PANTHER RNA-BINDING PROTEIN 34 44 564 - -
Cme06g02459 565 CDD RRM2_RBM34 336 412 IPR034221 -
Cme06g02459 565 Coils Coil 150 177 - -
Cme06g02459 565 CDD RRM1_RBM34 222 314 IPR034220 -
Cme06g02459 565 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 44 564 - -
Cme06g02459 565 Gene3D - 330 421 IPR012677 -
Cme06g02459 565 SUPERFAMILY RNA-binding domain, RBD 330 428 IPR035979 GO:0003676
Cme06g02459 565 MobiDBLite consensus disorder prediction 413 565 - -
Cme06g02459 565 MobiDBLite consensus disorder prediction 446 490 - -
Cme06g02459 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 416 IPR000504 GO:0003723
Cme06g02459 565 Gene3D - 219 323 IPR012677 -
Cme06g02459 565 MobiDBLite consensus disorder prediction 35 168 - -
Cme06g02459 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 410 IPR000504 GO:0003723
Cme06g02459 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 256 IPR000504 GO:0003723
Cme06g02459 565 SMART rrm1_1 223 314 IPR000504 GO:0003723
Cme06g02459 565 SMART rrm1_1 336 412 IPR000504 GO:0003723
Cme06g02459 565 SUPERFAMILY RNA-binding domain, RBD 222 329 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02459 K14837 NOP12; nucleolar protein 12 - csv:101206555 988.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02459 Cme-Chr6:31608798 Cme02g02026 Cme-Chr2:26390976 4.83E-08 dispersed
Cme06g02459 Cme-Chr6:31608798 Cme04g01364 Cme-Chr4:19341117 4.23E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31