Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02473 | ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAGAACGCGTCGGTGATGGACGCTTTCATGAATTCCGATCTCTCTTCCTACTGGGCTCCATCAGCCGCCTCCTCTCACTCTCTTCACCATCCACCACCACCTCAGTCCTCCGCCTCAACGTCCACTCCCCCGCCGGACCCACCTAAGTCCCTCCCCGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATTGACGGTGCTAGGGAGAGTTGGACTTATGCGATTTTCTGGCAGTCATCTTATGATTATTCCGGTGGGTCTGTTTTGGGGTGGGGTGATGGGTATTACAAAGGAGAGGAAGATAAAGGAAAGGGGAAAGCGAAAATGGTGTCGTCAGCGGCAGAGCAGGCTCACCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTGATTTCTGGCTCTGCCGCTGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACAGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGTGTTGGGTTACCGAGTCAGGCGTTTTACCACTCGACGCCGATTTGGGTCTCTGGTGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGAGCTAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCTAACGGTGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACATCGGATTTGATGAATAAGGTCAAAATTCTGTTCAATTTCAACAATCTCGAGACGAGTTCTTGGATTTCGGGAACTACCGCCGCCGCATCCGCTGCAGACGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCATCTAGTACAATCGAGATGAAGGATTCAATTACCACCACCGTCCCTTCCAGCAACGTTCCGGCAAAGCCAATCCGATCCGAAAATCCCAGTTCAAGTAGCTTAACGGAAAATATGAGCACGATTCAACAATCCCATCATAAACAGAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAGTCAAATCCCTCAAAGAACACCACCGCCACCGCCACCGTAACCACCAGCACCACTCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTTGGAAACGGAAGCCTCTTCTCCGGCCATTCACAGTACGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGAAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCTTCCGGTAAGGTAAAATCAGGCGATTCGGACCACTCAGATCTCGAAGCATCAGTGATCAGAGAAGTAGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAATTAAACCAGAAATTCTACGCTCTACGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAAGCCTCACTACTCGGTGACGCCGTTTCGTACATAAACGAGCTGAAATCGAAGCTCCAAATGGCAGAATCGGAGAAAACAGATATGGGAAAACATCTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATGTAGGATGTTACACAAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATTGAAGTTAAAATCATGGGTTGGGATGCGATGATCAGAATTCAAAGCAACAAGAAGAATCATCCGGCGGCGAGGTTGATGACGGCGTTTAAGGATTTGGATTTAGAAATGCTTCACGCCAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAAGCAACAGTGAAGATGGGGAGCAGATTTTACACACAAGAGCAGCTTAAAATGGCTCTTGTGGCCCGAGTCGGTGGTGGTGGTGGAGGCGGAAGCGGCGGTGGAATGATGTAA | 1989 | 48.67 | MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFYHSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASAADEGENDPSSMWISEPSSTIEMKDSITTTVPSSNVPAKPIRSENPSSSSLTENMSTIQQSHHKQSQSFLNFSDYGFESNPSKNTTATATVTTSTTPSFKPESGGMLNFGNGSLFSGHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQMAESEKTDMGKHLELLKKEMGGKDVGCYTNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSNKKNHPAARLMTAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGGGSGGGMM | 662 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31713059 | 31715361 | + | MELO3C013851.2.1 | Cme06g02473 | 331622 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02473 | 662 | PANTHER | TRANSCRIPTION FACTOR MYC2 | 11 | 649 | - | - | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 36 | 67 | - | - | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - | |
Cme06g02473 | 662 | SMART | finulus | 479 | 528 | IPR011598 | GO:0046983 | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 353 | 374 | - | - | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 395 | 414 | - | - | |
Cme06g02473 | 662 | PANTHER | MYC | 11 | 649 | IPR045084 | GO:0003700|GO:0006355 | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 353 | 384 | - | - | |
Cme06g02473 | 662 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - | |
Cme06g02473 | 662 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 473 | 522 | IPR011598 | GO:0046983 | |
Cme06g02473 | 662 | Coils | Coil | 526 | 546 | - | - | |
Cme06g02473 | 662 | CDD | bHLH_AtAIB_like | 470 | 546 | - | - | |
Cme06g02473 | 662 | Gene3D | - | 472 | 549 | IPR036638 | GO:0046983 | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 302 | 324 | - | - | |
Cme06g02473 | 662 | Pfam | Helix-loop-helix DNA-binding domain | 477 | 522 | IPR011598 | GO:0046983 | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 426 | 483 | - | - | |
Cme06g02473 | 662 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 476 | 542 | IPR036638 | GO:0046983 | |
Cme06g02473 | 662 | MobiDBLite | consensus disorder prediction | 432 | 483 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme04g00117 | Cme06g02473 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00693 | Cme-Chr8:4590003 | Cme06g02473 | Cme-Chr6:31713059 | 6.65E-17 | dispersed | |
Cme08g00694 | Cme-Chr8:4600454 | Cme06g02473 | Cme-Chr6:31713059 | 1.06E-15 | dispersed | |
Cme01g00155 | Cme-Chr1:1112296 | Cme06g02473 | Cme-Chr6:31713059 | 2.48E-17 | transposed | |
Cme03g01839 | Cme-Chr3:26743253 | Cme06g02473 | Cme-Chr6:31713059 | 4.73E-10 | transposed | |
Cme04g01562 | Cme-Chr4:22859940 | Cme06g02473 | Cme-Chr6:31713059 | 5.94E-13 | transposed | |
Cme05g00360 | Cme-Chr5:2862219 | Cme06g02473 | Cme-Chr6:31713059 | 2.78E-10 | transposed | |
Cme05g01073 | Cme-Chr5:16588892 | Cme06g02473 | Cme-Chr6:31713059 | 1.15E-07 | transposed | |
Cme05g01680 | Cme-Chr5:25832469 | Cme06g02473 | Cme-Chr6:31713059 | 9.67E-13 | transposed | |
Cme06g00002 | Cme-Chr6:17103 | Cme06g02473 | Cme-Chr6:31713059 | 5.15E-13 | transposed | |
Cme06g00090 | Cme-Chr6:579073 | Cme06g02473 | Cme-Chr6:31713059 | 1.17E-49 | transposed | |
Cme06g02389 | Cme-Chr6:31048084 | Cme06g02473 | Cme-Chr6:31713059 | 1.14E-23 | transposed | |
Cme11g02159 | Cme-Chr11:28989269 | Cme06g02473 | Cme-Chr6:31713059 | 5.24E-21 | transposed | |
Cme11g02260 | Cme-Chr11:29729018 | Cme06g02473 | Cme-Chr6:31713059 | 2.89E-24 | transposed | |
Cme12g01298 | Cme-Chr12:21048851 | Cme06g02473 | Cme-Chr6:31713059 | 1.75E-08 | transposed | |
Cme06g00385 | Cme-Chr6:2420541 | Cme06g02473 | Cme-Chr6:31713059 | 7.41E-17 | transposed | |
Cme04g00117 | Cme-Chr4:902979 | Cme06g02473 | Cme-Chr6:31713059 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41552 | PF14215 | bHLH-MYC_N | 8.10E-53 | CL0161 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02473 | K13422 | - | csv:101205372 | 1171.38 |