Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02473 ATGACGGATTATCGTTTGTCGACGATGAATCTCTGGACTGACGAGAACGCGTCGGTGATGGACGCTTTCATGAATTCCGATCTCTCTTCCTACTGGGCTCCATCAGCCGCCTCCTCTCACTCTCTTCACCATCCACCACCACCTCAGTCCTCCGCCTCAACGTCCACTCCCCCGCCGGACCCACCTAAGTCCCTCCCCGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATTGACGGTGCTAGGGAGAGTTGGACTTATGCGATTTTCTGGCAGTCATCTTATGATTATTCCGGTGGGTCTGTTTTGGGGTGGGGTGATGGGTATTACAAAGGAGAGGAAGATAAAGGAAAGGGGAAAGCGAAAATGGTGTCGTCAGCGGCAGAGCAGGCTCACCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTGATTTCTGGCTCTGCCGCTGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACAGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGTGTTGGGTTACCGAGTCAGGCGTTTTACCACTCGACGCCGATTTGGGTCTCTGGTGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGAGCTAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCTAACGGTGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACATCGGATTTGATGAATAAGGTCAAAATTCTGTTCAATTTCAACAATCTCGAGACGAGTTCTTGGATTTCGGGAACTACCGCCGCCGCATCCGCTGCAGACGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCATCTAGTACAATCGAGATGAAGGATTCAATTACCACCACCGTCCCTTCCAGCAACGTTCCGGCAAAGCCAATCCGATCCGAAAATCCCAGTTCAAGTAGCTTAACGGAAAATATGAGCACGATTCAACAATCCCATCATAAACAGAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAGTCAAATCCCTCAAAGAACACCACCGCCACCGCCACCGTAACCACCAGCACCACTCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTTGGAAACGGAAGCCTCTTCTCCGGCCATTCACAGTACGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGAAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCTTCCGGTAAGGTAAAATCAGGCGATTCGGACCACTCAGATCTCGAAGCATCAGTGATCAGAGAAGTAGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAATTAAACCAGAAATTCTACGCTCTACGAGCTGTAGTTCCAAACGTATCTAAAATGGACAAAGCCTCACTACTCGGTGACGCCGTTTCGTACATAAACGAGCTGAAATCGAAGCTCCAAATGGCAGAATCGGAGAAAACAGATATGGGAAAACATCTAGAATTGCTGAAGAAGGAGATGGGAGGGAAAGATGTAGGATGTTACACAAACCCAAATGATGAAGATCTGAAAATAGGGAAAAGAAAGGTAATGGATATGGAGATTGAAGTTAAAATCATGGGTTGGGATGCGATGATCAGAATTCAAAGCAACAAGAAGAATCATCCGGCGGCGAGGTTGATGACGGCGTTTAAGGATTTGGATTTAGAAATGCTTCACGCCAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAAGCAACAGTGAAGATGGGGAGCAGATTTTACACACAAGAGCAGCTTAAAATGGCTCTTGTGGCCCGAGTCGGTGGTGGTGGTGGAGGCGGAAGCGGCGGTGGAATGATGTAA 1989 48.67 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFYHSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASAADEGENDPSSMWISEPSSTIEMKDSITTTVPSSNVPAKPIRSENPSSSSLTENMSTIQQSHHKQSQSFLNFSDYGFESNPSKNTTATATVTTSTTPSFKPESGGMLNFGNGSLFSGHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQMAESEKTDMGKHLELLKKEMGGKDVGCYTNPNDEDLKIGKRKVMDMEIEVKIMGWDAMIRIQSNKKNHPAARLMTAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGGGGSGGGMM 662
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 31713059 31715361 + MELO3C013851.2.1 Cme06g02473 331622
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02473 662 PANTHER TRANSCRIPTION FACTOR MYC2 11 649 - -
Cme06g02473 662 MobiDBLite consensus disorder prediction 36 67 - -
Cme06g02473 662 MobiDBLite consensus disorder prediction 50 65 - -
Cme06g02473 662 SMART finulus 479 528 IPR011598 GO:0046983
Cme06g02473 662 MobiDBLite consensus disorder prediction 353 374 - -
Cme06g02473 662 MobiDBLite consensus disorder prediction 395 414 - -
Cme06g02473 662 PANTHER MYC 11 649 IPR045084 GO:0003700|GO:0006355
Cme06g02473 662 MobiDBLite consensus disorder prediction 353 384 - -
Cme06g02473 662 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Cme06g02473 662 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 473 522 IPR011598 GO:0046983
Cme06g02473 662 Coils Coil 526 546 - -
Cme06g02473 662 CDD bHLH_AtAIB_like 470 546 - -
Cme06g02473 662 Gene3D - 472 549 IPR036638 GO:0046983
Cme06g02473 662 MobiDBLite consensus disorder prediction 302 324 - -
Cme06g02473 662 Pfam Helix-loop-helix DNA-binding domain 477 522 IPR011598 GO:0046983
Cme06g02473 662 MobiDBLite consensus disorder prediction 426 483 - -
Cme06g02473 662 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 476 542 IPR036638 GO:0046983
Cme06g02473 662 MobiDBLite consensus disorder prediction 432 483 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cme04g00117 Cme06g02473 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00693 Cme-Chr8:4590003 Cme06g02473 Cme-Chr6:31713059 6.65E-17 dispersed
Cme08g00694 Cme-Chr8:4600454 Cme06g02473 Cme-Chr6:31713059 1.06E-15 dispersed
Cme01g00155 Cme-Chr1:1112296 Cme06g02473 Cme-Chr6:31713059 2.48E-17 transposed
Cme03g01839 Cme-Chr3:26743253 Cme06g02473 Cme-Chr6:31713059 4.73E-10 transposed
Cme04g01562 Cme-Chr4:22859940 Cme06g02473 Cme-Chr6:31713059 5.94E-13 transposed
Cme05g00360 Cme-Chr5:2862219 Cme06g02473 Cme-Chr6:31713059 2.78E-10 transposed
Cme05g01073 Cme-Chr5:16588892 Cme06g02473 Cme-Chr6:31713059 1.15E-07 transposed
Cme05g01680 Cme-Chr5:25832469 Cme06g02473 Cme-Chr6:31713059 9.67E-13 transposed
Cme06g00002 Cme-Chr6:17103 Cme06g02473 Cme-Chr6:31713059 5.15E-13 transposed
Cme06g00090 Cme-Chr6:579073 Cme06g02473 Cme-Chr6:31713059 1.17E-49 transposed
Cme06g02389 Cme-Chr6:31048084 Cme06g02473 Cme-Chr6:31713059 1.14E-23 transposed
Cme11g02159 Cme-Chr11:28989269 Cme06g02473 Cme-Chr6:31713059 5.24E-21 transposed
Cme11g02260 Cme-Chr11:29729018 Cme06g02473 Cme-Chr6:31713059 2.89E-24 transposed
Cme12g01298 Cme-Chr12:21048851 Cme06g02473 Cme-Chr6:31713059 1.75E-08 transposed
Cme06g00385 Cme-Chr6:2420541 Cme06g02473 Cme-Chr6:31713059 7.41E-17 transposed
Cme04g00117 Cme-Chr4:902979 Cme06g02473 Cme-Chr6:31713059 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41552 PF14215 bHLH-MYC_N 8.10E-53 CL0161 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02473 K13422 - csv:101205372 1171.38