Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g02478 | ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCATCAACAATCAACTCCACCCAACAGGATGATCCCCAACAACGCTTCTTATTCCGCTAATATGCCAAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAAATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCTTCTAAGCCTTCCGAATCTCCCAATGCAGCTTCTTATGATGGATCCCAGTCTGAATTGCGTACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCTCCTGATGGGAATATCGCCTTGGGTTTATCACCAACCCCCATCACTTCTTCCGCCGTTCCTGCCGATTCCGCCGGCATGCACTCCCCAGATCCTCGCCCTAAGAAGAACAGAGGACGGCCGCCCGGTACAGGGAAGAAGCAAATGGATGCTTTGGGGACCGGCGGTGTTGGTTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGGGCTGTCTGCAATGTTACCCTTCAACCCGCATTGTCATCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTTTTGATTTCTGAAAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACGGCAGCATCGACAGTTCAGGTTATAGTTGGTAGCTTTCTTGTGGACGGGAAAAAGCTAGGAGCCAGTATACAGAAATCTGGGCCATCGTCTACATCTCCTAATATGTTAAACTTTGGTACACCCGTGGCAGCAGGCTGCCCCTCTGAAGGCGCATCAAATAATTCATCCGACGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATGTACACCAATGCCAACCAACCAATTCATAATATGCAGATGTATCAACAATTATGGGCTAGCCGAAATCAATAA | 1089 | 48.03 | MDSRERSMPSVHQHHQQSTPPNRMIPNNASYSANMPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSAVPADSAGMHSPDPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPALSSGSVSYEGRYEIISLSGSFLISENNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFGTPVAAGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQQLWASRNQ | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31751191 | 31759115 | + | MELO3C013856.2.1 | Cme06g02478 | 331627 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g02478 | 362 | Gene3D | - | 170 | 295 | - | - | |
Cme06g02478 | 362 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 170 | 281 | IPR005175 | - | |
Cme06g02478 | 362 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 | 82 | 355 | - | - | |
Cme06g02478 | 362 | MobiDBLite | consensus disorder prediction | 292 | 307 | - | - | |
Cme06g02478 | 362 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 82 | 355 | IPR039605 | GO:0003680 | |
Cme06g02478 | 362 | ProSiteProfiles | PPC domain profile profile. | 164 | 303 | IPR005175 | - | |
Cme06g02478 | 362 | MobiDBLite | consensus disorder prediction | 12 | 93 | - | - | |
Cme06g02478 | 362 | MobiDBLite | consensus disorder prediction | 316 | 345 | - | - | |
Cme06g02478 | 362 | SMART | AT_hook_2 | 144 | 156 | IPR017956 | GO:0003677 | |
Cme06g02478 | 362 | SMART | AT_hook_2 | 100 | 112 | IPR017956 | GO:0003677 | |
Cme06g02478 | 362 | CDD | DUF296 | 169 | 281 | IPR005175 | - | |
Cme06g02478 | 362 | MobiDBLite | consensus disorder prediction | 292 | 345 | - | - | |
Cme06g02478 | 362 | MobiDBLite | consensus disorder prediction | 1 | 162 | - | - | |
Cme06g02478 | 362 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 168 | 282 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01327 | Cme-Chr3:22821262 | Cme06g02478 | Cme-Chr6:31751191 | 1.09E-72 | dispersed | |
Cme06g02478 | Cme-Chr6:31751191 | Cme07g00024 | Cme-Chr7:197832 | 5.33E-62 | dispersed | |
Cme11g01876 | Cme-Chr11:26941306 | Cme06g02478 | Cme-Chr6:31751191 | 5.07E-25 | dispersed | |
Cme11g01877 | Cme-Chr11:26955323 | Cme06g02478 | Cme-Chr6:31751191 | 6.32E-20 | dispersed | |
Cme04g00108 | Cme-Chr4:858647 | Cme06g02478 | Cme-Chr6:31751191 | 5.70E-101 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g02478 | - | - | csv:101204243 | 676.011 |