Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02478 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCATCAACAATCAACTCCACCCAACAGGATGATCCCCAACAACGCTTCTTATTCCGCTAATATGCCAAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAAATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCTTCTAAGCCTTCCGAATCTCCCAATGCAGCTTCTTATGATGGATCCCAGTCTGAATTGCGTACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCTCCTGATGGGAATATCGCCTTGGGTTTATCACCAACCCCCATCACTTCTTCCGCCGTTCCTGCCGATTCCGCCGGCATGCACTCCCCAGATCCTCGCCCTAAGAAGAACAGAGGACGGCCGCCCGGTACAGGGAAGAAGCAAATGGATGCTTTGGGGACCGGCGGTGTTGGTTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGGGCTGTCTGCAATGTTACCCTTCAACCCGCATTGTCATCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTTTTGATTTCTGAAAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACGGCAGCATCGACAGTTCAGGTTATAGTTGGTAGCTTTCTTGTGGACGGGAAAAAGCTAGGAGCCAGTATACAGAAATCTGGGCCATCGTCTACATCTCCTAATATGTTAAACTTTGGTACACCCGTGGCAGCAGGCTGCCCCTCTGAAGGCGCATCAAATAATTCATCCGACGACAATGGTGGTAGCCCTTTAAGCCGGGGGCCTGGAATGTACACCAATGCCAACCAACCAATTCATAATATGCAGATGTATCAACAATTATGGGCTAGCCGAAATCAATAA 1089 48.03 MDSRERSMPSVHQHHQQSTPPNRMIPNNASYSANMPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSAVPADSAGMHSPDPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPALSSGSVSYEGRYEIISLSGSFLISENNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFGTPVAAGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQQLWASRNQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31751191 31759115 + MELO3C013856.2.1 Cme06g02478 331627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02478 362 Gene3D - 170 295 - -
Cme06g02478 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 281 IPR005175 -
Cme06g02478 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 82 355 - -
Cme06g02478 362 MobiDBLite consensus disorder prediction 292 307 - -
Cme06g02478 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 82 355 IPR039605 GO:0003680
Cme06g02478 362 ProSiteProfiles PPC domain profile profile. 164 303 IPR005175 -
Cme06g02478 362 MobiDBLite consensus disorder prediction 12 93 - -
Cme06g02478 362 MobiDBLite consensus disorder prediction 316 345 - -
Cme06g02478 362 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Cme06g02478 362 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Cme06g02478 362 CDD DUF296 169 281 IPR005175 -
Cme06g02478 362 MobiDBLite consensus disorder prediction 292 345 - -
Cme06g02478 362 MobiDBLite consensus disorder prediction 1 162 - -
Cme06g02478 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01327 Cme-Chr3:22821262 Cme06g02478 Cme-Chr6:31751191 1.09E-72 dispersed
Cme06g02478 Cme-Chr6:31751191 Cme07g00024 Cme-Chr7:197832 5.33E-62 dispersed
Cme11g01876 Cme-Chr11:26941306 Cme06g02478 Cme-Chr6:31751191 5.07E-25 dispersed
Cme11g01877 Cme-Chr11:26955323 Cme06g02478 Cme-Chr6:31751191 6.32E-20 dispersed
Cme04g00108 Cme-Chr4:858647 Cme06g02478 Cme-Chr6:31751191 5.70E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02478 - - csv:101204243 676.011