Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02479 ATGGCTGGGTTGGATTTAGGGAGTCGATATCTAACTCACCTTCAACCACAAGTAGACGGCGGTCATTTCTCCTCCGGTGACCACCAAGACGATGACGATCCCCACCAAACCCTAGGTGGTACGGGGGATGTCGTTGGCCGACGTCCACGCGGTCGGCCACCCGGTTCGAAAAACAAGCCAAAGCCGCCGGTTATCATCACCCGTGAGAGCGCCAACACGCTTCGTGTCCACATCTTAGAAGTTGGCAGCGGCTGTGATGTTTTCGATTGCGTCGCTTCCTACGCCCGCCGACGACAGCGTGGGATCTGTATTTTGAGCGGTAGCGGTAACGTCACCAACGTCGGTCTCCGCCAGCCAGCAGCAGCTGGGGTGTTGACTCTTCAAGGGAGGTTTGAAATTTTGTCACTGTCGGGATCGTTTCTGCCGCCGCCTGCTCCACCCGGTGCGACGAGTTTGACGATATTTTTAGCCGGAGGGCAGGGGCAAGTAGTGGGAGGGACGGTGGCTGGTGAATTGACGGCGGCCGGGCCGGTGATTTTGATTGCAGCTTCGTTTACGAATGTGGCGTATGAGAGATTGCCATTGGATGAGGAGGATCAGCAACAAACTCCTGCAGGCGGCGGAGGGAGCGGCGGCGGAGTTGGTAACAACAACAATAATAATCCGTTTCAAGACCCAACAAATTCAGGACTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA 747 54.62 MAGLDLGSRYLTHLQPQVDGGHFSSGDHQDDDDPHQTLGGTGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQTPAGGGGSGGGVGNNNNNNPFQDPTNSGLPFLNLPLHMQNVQLPPF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31767235 31768221 - MELO3C013857.2.1 Cme06g02479 331628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02479 248 ProSiteProfiles PPC domain profile profile. 71 207 IPR005175 -
Cme06g02479 248 MobiDBLite consensus disorder prediction 16 65 - -
Cme06g02479 248 MobiDBLite consensus disorder prediction 199 232 - -
Cme06g02479 248 Gene3D - 74 203 - -
Cme06g02479 248 PIRSF ESCAROLA 9 244 IPR014476 GO:0003680
Cme06g02479 248 CDD DUF296 75 185 IPR005175 -
Cme06g02479 248 MobiDBLite consensus disorder prediction 203 232 - -
Cme06g02479 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 75 187 IPR005175 -
Cme06g02479 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 247 IPR014476 GO:0003680
Cme06g02479 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 32 247 - -
Cme06g02479 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 71 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02479 Cme-Chr6:31767235 Cme11g02481 Cme-Chr11:31446850 2.77E-92 dispersed
Cme04g00106 Cme-Chr4:850979 Cme06g02479 Cme-Chr6:31767235 1.38E-86 wgd
Cme06g00302 Cme-Chr6:1851064 Cme06g02479 Cme-Chr6:31767235 1.51E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02479 - - csv:101210132 429.869