Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g02487 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCTTCCCGCCGACAATTCCGACGTCCTCTTCTCCGCCTCCGACCCACTTGACGAAACCCTAGGCCATTCCTTTTGTTACGTCCGTTCTTCTAACCGTTTCCTTTCTCCTTCTCATTCCGATCGCTTTCTTTCCCCTTCTCAGTCCCTTCGTTTTTCCCCTCCTCACGACCCTTCCTCACTTCCTACTACTACTAGGACTAGAACTGGCCCCCCGGAGACTGCTTTCAAAGCCATCTCTGGTGCTTCTGTCAGTGCTAATAGTTCTATTCCCAGATCTGTTCTTATGCTTGATGCTGTTTATGACGATGCCACTGACACTGCTCTTGGTGCTTCTGCCGGAGGTTGTGGTGTTAGAGGGAGTATTTTGAATGGTTTTGAGAGTACTTCTTCTTTTACTGCTCTCCCGCTTCAGCCTGTTCCTAGAGGTGGCACTGAACCTTTGGAACGAGGTGGATTTTTTCTCTCTGGTCCAATTGAGCGTGGGGCGTTGTCTGGTCCACTTGATGCTAATGTCGATGCTGCTGCTGCCGCTGCTGCTGCCGGTGGTGGTAGTGGTGGCGGGAGAGTTCATTTCTCTGCTCCACTTGGTGGGATGTACGTGAAGAAGAAGAGGAAGAAGGGCATTTCGGGGTTTAGGAAGGCGTTTACGAGGAATTTTTCGGATAAGCGTCCGTGGGTGGTGCCGGTGTTGAATTTTGTTGGTCGGAAGGAGAGTTCGACGGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGTGATGTTCAATGGGCGCTCGGGAAGGCTGGAGAGGATCGGGTACATGTGGTTGTATCGGAAGAGCAAGGGTGGTTGTTCGTTGGGATTTATGATGGCTTCAATGGCCCCGATGCGCCGGAATTCTTGATGGGTAATCTTTACAGAGCTGTATTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGACGATAATGAGGAGGCTGCTGCTAATTCCAACCCTCCGAATGTGGCGGGAGAGAGCACGGTCGGCGTGCGTGTGAATGAAACTAATGCCGACCCATCCTCGAGAGCCTCTGGTCAAACCATTCAAACTAATGGGAATATTTCAGTAGTTGGAAATGAAGTAGAAGTGGAACAACCGGCTGCTGATCGAGGATCAGCTAAGCGGGTTACGTTTCAATCCGAGGATGTACCGGAGAACAGGCGGAGGCGGCGCCTGTGGGAGTATTTAGCGGAGGACGATACACAGGACGGACTTGATCTTTCAGGTTCAGATAGATTTGCATTTTCTGTTGATGACGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGTTGTTATTGTCCAAGTTAAAACAAGGGTTGTCAAAGCATAAGGAGGGTCATGTTAAGACTTTGTTCCCATGGAAGTATGGTTTAGGTGATAAAGAAAAGGCTGATGAGACTGAGAATAGGGTGGAGGAGACATCATATCGAAGTGGTAAAAGGAGAAAGGAAGGTTTAATTGATCATGAGTTGGTGTTGGGGGCATTGTCACGAGCTCTTGAGATAACTGAATTAGCATATTTGGACATGACAGATAAGTTGCTTGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGCTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATTTGGGTGACAGCCGTGCCATTGTTGCACAGTATGAGCAACAAGAAGTTGGCCCTAGTGAAGACATGAAGGAGGAGGGCCACAAAAAAACGGGCATGGAGGGTATAATTGAGGAGTCTACAACGAGTGAAGGGAAAATAACTCTAACGAACCGACCTTCGGCTCAGACGACGAGATTGACTGCATTGCAGCTATCCACCGATCATAGTACGAGCATTGAAGAAGAAGTAAGAAGAATAAAGAATGAGCACCCTGATGACAAACAGTGCATTGTCAATGATAGAGTGAAGGGCCGTCTAAAGGTTACAAGGGCATTTGGTGCCGGATTTTTGAAACAGCCAAAGCTGAATGATGCATTACTGGAAATGTTTCGGAACGAGTATATTGGTACTGCACCATATTTATCATGTTTGCCATCGCTTCGTCACCATAGACTCTGCCCTACGGATCAATTCATAGTGCTCTCATCTGATGGATTGTATCAATATCTAACCAATCAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCAGCTAGAAAAGCAGGAATGGATTTTCATGAATTGTTGGACATCCCACAGGGGGATCGAAGAAAGTATCATGATGATGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTTTGA 2439 47.52 MGSGVSSLFSCLKPETRPAALPADNSDVLFSASDPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSQSLRFSPPHDPSSLPTTTRTRTGPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTALGASAGGCGVRGSILNGFESTSSFTALPLQPVPRGGTEPLERGGFFLSGPIERGALSGPLDANVDAAAAAAAAGGGSGGGRVHFSAPLGGMYVKKKRKKGISGFRKAFTRNFSDKRPWVVPVLNFVGRKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDNEEAAANSNPPNVAGESTVGVRVNETNADPSSRASGQTIQTNGNISVVGNEVEVEQPAADRGSAKRVTFQSEDVPENRRRRRLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHVKTLFPWKYGLGDKEKADETENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNLGDSRAIVAQYEQQEVGPSEDMKEEGHKKTGMEGIIEESTTSEGKITLTNRPSAQTTRLTALQLSTDHSTSIEEEVRRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCLPSLRHHRLCPTDQFIVLSSDGLYQYLTNQEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31828616 31838218 - MELO3C013864.2.1 Cme06g02487 331636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g02487 812 Pfam Protein phosphatase 2C 633 765 IPR001932 -
Cme06g02487 812 MobiDBLite consensus disorder prediction 64 90 - -
Cme06g02487 812 Gene3D - 252 807 IPR036457 -
Cme06g02487 812 ProSiteProfiles PPM-type phosphatase domain profile. 266 800 IPR001932 -
Cme06g02487 812 PANTHER PROTEIN PHOSPHATASE 2C 21 810 IPR015655 GO:0004722|GO:0006470
Cme06g02487 812 SUPERFAMILY PP2C-like 278 801 IPR036457 -
Cme06g02487 812 MobiDBLite consensus disorder prediction 64 93 - -
Cme06g02487 812 CDD PP2Cc 512 800 IPR001932 -
Cme06g02487 812 SMART PP2C_4 266 798 IPR001932 -
Cme06g02487 812 PANTHER PROTEIN PHOSPHATASE 2C 29 21 810 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00729 Cme-Chr6:4815748 Cme06g02487 Cme-Chr6:31828616 6.78E-15 dispersed
Cme06g02487 Cme-Chr6:31828616 Cme08g02405 Cme-Chr8:30953251 3.41E-35 dispersed
Cme06g02487 Cme-Chr6:31828616 Cme11g01301 Cme-Chr11:19824272 5.88E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g02487 - - csv:101202795 1551.57